Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00767 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGCGAAAAATTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCGCCTTCTGATAGTGGGATGAGAAGATGTGGTTTGAATATAGATGGATTTAACCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCTGAAGGACTTAAATCAATTGGTCGATCACTCAAGTTTGGAGTATCTCGAGCTGTATTTCCGGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTTGATCCTCAAGACAAATTGCTCTTATTCTTGAATAAACTTTTTGTCATATCATGTTTTTTAGCAATATCGGTGGACCCGCTATTCTTTTATGTTCCTGTCATTAACCAACAGTCGAGCTGTCTTGGCATCGATAGAAAGCTGGCAATTACAGTGACAACATTGCGAACAGTTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTCGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAAAGATACTTGCGGCGGTATTTCATTATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTCTGGAGATTTCTTCAGAGGTCCAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTCATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTACCATTGACTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACAGCCTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCACTGTGGTACTTATTAGCTGTGGAACGCAATGACACATGTTGGCAGAAGTATTGTAGTGCCCCTTGCAGGAAAAATTTCTTATATTGCGGTAACCAAGACATGGAGGGCTATTCGACTTGGAACCAGACAGGTGTGGATGCCCTAATGTCGAGATGCAAACCTGCTGATGATAATGATTCGTTTGATTTTGGAATCTTTAAACAGGCTTTGTCCTCTGGCATTGCGGCATCCAAAAATTTTGTCGGCAAATATTGTTACTGTCTATGGTGGGGCCTACAGAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGCTGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACCATAAGGCTTGAGGAAATGAGGGTGAAAAAGCGTGATTCGGAGCAATGGATGCATCATCGTTTGCTGCCACAGGAACTTCGGGAGAGAGTCAGGCGATATGATCAGTACAAGTGGTTGGAGACCCGTGGAGTCGACGAACAGAGTTTGGTTCAAACTCTCCCTAAGGATCTTAGGAGAGATATTAAGCGACATCTTTGTCTCGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTTGATGCTATTTGTGAGCGGCTAAAACCGTGTTTGTTTACAGAGTACACTTACATAGTTCGTGAGGGTGATCCAGTCGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACTGATGGTGGGCGGAGCGGATTTTTCAATCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACTTGGGCTCTTGACCCGAAATCTGGTTCGAATCTTCCATCTTCGACAAGGACGGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCCCTCGTCGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACGTTTCGATTCTACTCGCAACAATGGAGGACATGGGCTGCTTGCTTCATCCAAGCGGCATGGCGCCGATACTCCAAGAGAAAGACTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCGGAGGAATCCGAGACATCTCAAACGACGACCACCACAAGCGGAGGAGGCTCTTACAGTATTCGTGCAACTTTCCTAGCTTCTAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGCAACGCAAAGAGCGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCCGAACCAGATTTTAGCGCGGATGATGCCGATTGA 2211 44.32 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGLNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCFLAISVDPLFFYVPVINQQSSCLGIDRKLAITVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLFIVFLQYIPRFLRALPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCSAPCRKNFLYCGNQDMEGYSTWNQTGVDALMSRCKPADDNDSFDFGIFKQALSSGIAASKNFVGKYCYCLWWGLQNLSTLGQGLQTSTYPAEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRQKEEVAAEESETSQTTTTTSGGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7356547 7379002 + Carg16435-RA Car12g00767 158383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00767 736 CDD CAP_ED 504 635 IPR000595 -
Car12g00767 736 Gene3D Helix hairpin bin 432 495 - -
Car12g00767 736 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Car12g00767 736 Gene3D Jelly Rolls 502 622 IPR014710 -
Car12g00767 736 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 733 - -
Car12g00767 736 SMART cnmp_10 504 635 IPR000595 -
Car12g00767 736 SUPERFAMILY cAMP-binding domain-like 434 624 IPR018490 -
Car12g00767 736 Pfam Ion transport protein 109 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car12g00767 736 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Car12g00767 736 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
Car12g00767 736 MobiDBLite consensus disorder prediction 665 685 - -
Car12g00767 736 Gene3D - 111 429 - -
Car12g00767 736 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 733 - -
Car12g00767 736 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00917 Car12g00767 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00892 Car-Chr2:6324982 Car12g00767 Car-Chr12:7356547 0 dispersed
Car06g00860 Car-Chr6:6707727 Car12g00767 Car-Chr12:7356547 0 dispersed
Car10g00125 Car-Chr10:587288 Car12g00767 Car-Chr12:7356547 1.29E-29 dispersed
Car11g00885 Car-Chr11:5508120 Car12g00767 Car-Chr12:7356547 0 dispersed
Car12g00767 Car-Chr12:7356547 Car14g00583 Car-Chr14:3167288 0 dispersed
Car16g00057 Car-Chr16:383395 Car12g00767 Car-Chr12:7356547 1.74E-123 dispersed
Car18g01221 Car-Chr18:11742365 Car12g00767 Car-Chr12:7356547 1.29E-07 dispersed
Car20g00437 Car-Chr20:2459197 Car12g00767 Car-Chr12:7356547 1.55E-156 dispersed
Car04g02689 Car-Chr4:20863967 Car12g00767 Car-Chr12:7356547 1.59E-128 transposed
Car13g00932 Car-Chr13:9556231 Car12g00767 Car-Chr12:7356547 1.06E-123 transposed
Car02g00919 Car-Chr2:6515664 Car12g00767 Car-Chr12:7356547 2.05E-39 transposed
Car12g00767 Car-Chr12:7356547 Car05g00917 Car-Chr5:8888888 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00767 K05391 - csv:101219180 1345.1