Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00782 ATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCAAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCCTAGGAGCACCCTCTGTATGTTGTCTACACACACCAAGTTATGGTACACATCCCGCTGCTACTTTTTCCCCCGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACGTCTCTTGGCTATCTGTCAAACCCTCGATTCTATTCATCAACTTCTAGCAGGAAGGCGGATATTACTGGAGATACTGGTGTTCCACTTGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGTTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGCTCTTAGATTCACATCCATATCTGAAAAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAATTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTATGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGAAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATCTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAAGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAGTTCGTATGCAGAGCTGACAATTGGTTGCAACCTTAAAAGGATGGGTAAAGAAGAACTTTTCTCAACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATGAAGGAAAATGGTGCAACCTTGGGTAACTGA 1602 42.32 MRLFILNSIYSASKSYLNPCSFQYCKSYTKISEYVNQVLRPSVVLNKQYYKDESHSLKNVSRTGFLGAPSVCCLHTPSYGTHPAATFSPASPVKYWNTIPPTSLGYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSVVDAASFTGQKAREVSDEFSPHVDKLLDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADLSTVSKISDDIKSMLKSHPKVFLGKEAPYCFLSQIESSYAELTIGCNLKRMGKEELFSTEQDILLQSVQIMKENGATLGN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7528971 7534160 - Carg16450-RA Car12g00782 158398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00782 533 Pfam Mechanosensitive ion channel 328 529 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00782 Car-Chr12:7528971 Car16g00778 Car-Chr16:4963208 1.70E-11 dispersed
Car12g00782 Car-Chr12:7528971 Car05g00491 Car-Chr5:2839254 9.84E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00782 K22047 - csv:101220483 827.78