Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00782 ATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCAAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCCTAGGAGCACCCTCTGTATGTTGTCTACACACACCAAGTTATGGTACACATCCCGCTGCTACTTTTTCCCCCGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACGTCTCTTGGCTATCTGTCAAACCCTCGATTCTATTCATCAACTTCTAGCAGGAAGGCGGATATTACTGGAGATACTGGTGTTCCACTTGCTTCTTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGTTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGCTCTTAGATTCACATCCATATCTGAAAAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAATTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTATGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGAAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATCTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAAGTCTCACCCTAAGGTATTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCAAATTGAAAGTTCGTATGCAGAGCTGACAATTGGTTGCAACCTTAAAAGGATGGGTAAAGAAGAACTTTTCTCAACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATGAAGGAAAATGGTGCAACCTTGGGTAACTGA 1602 42.32 MRLFILNSIYSASKSYLNPCSFQYCKSYTKISEYVNQVLRPSVVLNKQYYKDESHSLKNVSRTGFLGAPSVCCLHTPSYGTHPAATFSPASPVKYWNTIPPTSLGYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSVVDAASFTGQKAREVSDEFSPHVDKLLDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADLSTVSKISDDIKSMLKSHPKVFLGKEAPYCFLSQIESSYAELTIGCNLKRMGKEELFSTEQDILLQSVQIMKENGATLGN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7528971 7534160 - Carg16450-RA Car12g00782 158398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00782 533 Pfam Mechanosensitive ion channel 328 529 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00782 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00782 Car-Chr12:7528971 Car16g00778 Car-Chr16:4963208 1.70E-11 dispersed
Car12g00782 Car-Chr12:7528971 Car05g00491 Car-Chr5:2839254 9.84E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00782 . 149 532 Mechanosensitive Ion Channel Family AT4G00290 69.3 2.0e-153 539.7
Car16g00778 . 24 748 Mechanosensitive Ion Channel Family AT5G10490 54.0 2.1e-193 672.9
Car05g00491 . 10 730 Mechanosensitive Ion Channel Family AT5G10490 53.1 3.2e-186 649.0
Car12g00181 . 61 667 Mechanosensitive Ion Channel Family AT5G10490 57.7 5.1e-184 641.7
Car05g00491 . 10 710 Mechanosensitive Ion Channel Family AT1G58200 55.3 1.5e-196 683.3
Car12g00181 . 10 632 Mechanosensitive Ion Channel Family AT1G58200 55.5 4.2e-178 622.1
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G53470 54.9 6.6e-200 694.9
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G78610 57.3 4.9e-216 748.4
Car20g00632 CCT 229 778 Mechanosensitive Ion Channel Family AT2G17000 58.6 2.5e-172 603.2
Car11g01388 CCT 270 862 Mechanosensitive Ion Channel Family AT2G17000 52.3 3.3e-172 602.8
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G19520 51.5 2.2e-79 294.3
Car10g00675 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 2.9e-201 699.1
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G12080 59.4 6.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00782 Car_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0