Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00806 ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACCGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGATACGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGCGGCTTGCTTCGCTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACACCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCGCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGGGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCCTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCCATTAGAGATGAGTTACATATCAATGAAGACATGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGACCTCCTACTGCTTCTTTGGAACTCATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTGCTTTACTAGAGCATGATAATGTGAAGTACCCAATCGATGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAACGCACAGGAAATAGACCTGCTGCGGCCATCCCTACCATAGACGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGCAACCATGAAAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACGCATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAAATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTAAGAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTACGGGAACCTTTTTGCGGACTTGGAAAAGATGACGAAAATCATGGATGAGTGCAAGGCACAGGCACGAAAGGAAGAAGAAATTGCAGCGGAGAACCGTGCTCTCCAGTTGGCCGAGGCTGAGGCTAATCGAACTGTAGGAGAAAATGCTGATGGTTCTGAAGCTGTGTCTGCGTTAGCAGTTGATGGTGAAAATTCTATGCCTCCCAATGAATTAACGGGTGAACAACAAAACTCTTCCTTAGGAAATGAACATGAAGCTTCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGTTGCAGCAAGCTCGGATATTGGTTTACCTGATGACAAACTACCTTCTGCAGTGGCAGAGAATGATGCATCATCGTCTGACAAGGCTTTCGATGATTCTGATAAGAGTCAAACCATCGACGTTCCTTCACAAGAACTCGTGGTCCCTCCTGCTAATGGCACTCCAGATGTGCCCGGTACAGTGGAAAATAAGATCAGCAATGATTTGGTTGATGGAACTGCTCCTATCGAAAATGCTGAATGTGGTACCGATATTGTCAAGGAAGGTAAAGATGTCGAAACTCAGCAACCTGTGATCGAAGCTGGAAACTCGGATGTGAATTCAACTAATCTGGATTCTTCTAATAATGATGTCGTAGAACTCCCTCGTGGCGACGAGGAAGCAACGGGATCAAATGTGTAG 3072 45.21 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNVKYPIDEKVNKEKKKGSKRTGNRPAAAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALKKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLFADLEKMTKIMDECKAQARKEEEIAAENRALQLAEAEANRTVGENADGSEAVSALAVDGENSMPPNELTGEQQNSSLGNEHEASNAMDIDAEKESVAASSDIGLPDDKLPSAVAENDASSSDKAFDDSDKSQTIDVPSQELVVPPANGTPDVPGTVENKISNDLVDGTAPIENAECGTDIVKEGKDVETQQPVIEAGNSDVNSTNLDSSNNDVVELPRGDEEATGSNV 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7753947 7764721 - Carg16474-RA Car12g00806 158422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00806 1023 MobiDBLite consensus disorder prediction 157 176 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 213 234 - -
Car12g00806 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Car12g00806 1023 MobiDBLite consensus disorder prediction 979 1023 - -
Car12g00806 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Car12g00806 1023 Coils Coil 167 187 - -
Car12g00806 1023 Pfam Myb-like DNA-binding domain 10 70 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 113 150 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 860 877 - -
Car12g00806 1023 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Car12g00806 1023 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Car12g00806 1023 MobiDBLite consensus disorder prediction 854 954 - -
Car12g00806 1023 Coils Coil 799 832 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 987 1007 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 400 414 - -
Car12g00806 1023 MobiDBLite consensus disorder prediction 381 425 - -
Car12g00806 1023 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00806 Car-Chr12:7753947 Car05g00545 Car-Chr5:3189819 1.11E-10 dispersed
Car10g00881 Car-Chr10:5348876 Car12g00806 Car-Chr12:7753947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4452 PF11831 Myb_Cef 1.90E-58 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00806 K12860 - csv:101206265 1682.15