Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00819 ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGCCTTGCAACTTGGGTCTGGCGGAAGCGGCGGCGGCGGCGACGGGTTGAGAGGGATAGCTGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGATGAACTTAATAACAATAATAATAACAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCTGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATTCGTCCGAGAGTTCGAGCACGACGTGGACAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATAGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGAGCGGTGGCTCAACTTGTGGCTGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGTGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG 1008 50.2 MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMALQLGSGGSGGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7854264 7859226 + Carg16488-RA Car12g00819 158435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00819 335 MobiDBLite consensus disorder prediction 90 117 - -
Car12g00819 335 Pfam Helix-loop-helix DNA-binding domain 185 229 IPR011598 GO:0046983
Car12g00819 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01161 Car-Chr5:11070798 Car12g00819 Car-Chr12:7854264 3.33E-57 dispersed
Car08g00276 Car-Chr8:1740022 Car12g00819 Car-Chr12:7854264 6.58E-21 dispersed
Car12g00819 Car-Chr12:7854264 Car12g01123 Car-Chr12:10941072 6.14E-59 dispersed
Car12g00819 Car-Chr12:7854264 Car17g01144 Car-Chr17:8792189 1.35E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4456 PF00010 HLH 7.50E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00819 - - cmax:111465659 510.76