Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00824 ATGAAACATATTTTCAAGAAGTTTCATATTGGAAGCAATCACGAGCCGAATCGGCCTAACGAGAATCCGTTGCCTGGAGCAGCGTCGTCGTCAGATAATCGTCCTGCAACTGCTCCGGGGCAGATTTCCGGCAACTCTCCGTCGAGTCCTTCGTCGTCGCCGTTGCCGTCGCCGTCGCTGGCAACAACTCCCCCAGGGGGCGGAAGCACGGCTTCGGTTTCGGTAGCTCCCAATCGGTCTGACTACTTTTCTTCAGAGGAAGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCCGACTTCCGGGATGATCCGGAGAAGGACCAAATTCGAGCTGCAACGCTTTTGAGCTTGGGAAATCACCGGATTGATTCCACTTCCAGGGACCAAGTAGATGCTGCCGAGGCGCTTTCGAGGCAATATTGGGAATATAATCTCCTTGACTATGAAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAACAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTAATGGTCAATATGACTGTTGATTCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTGAGAGTTTTGGTTCAGAGGCTTGCTGAGCTCGTTATGGGACACATGGGTGGACCTGTAAAGGACGCCAATTTTATGCTAGCTAGGTGGATGGAAAGAAGCACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCATTGCTTTTCAAGGTGTTAGCTGACGGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATCATAAAGATGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACGCTTATACCAGCAGACGTATTAAATGCAAAGGACACTACTATGTTGAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTCCACTACTCTAATGATGTTGAAATTTCTTCCACGAAACCAACACCATCACTTGAGGAAAGCAGCAGTCAAAACTATGAAGCAGAGGGCAGCTCACTGGTGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCCTCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGTCCATTCAGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATCCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAGATAAAAGGAACTGGAAAAAGTTTCATTCTTAATAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTATTGGGCATCCTCCTGTACCGTTGTGGAAAAATCGAGTTGCATTCAATGCTGTTCCCAAGAAAAAAGAGTACGATTATATGGAGGGTCGTCTTCCAAGAATTAATTGTGGATATAATGATCATAATATGGCATCATCTTCTTCTGCCAACTCTACAGTCTCTGAAAGTGTCAGCCTTTGTGGTTCAGGAACATCCATTGAATCAAATGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGCACTCTCGGTCAACATCTGCCATGATTGAGCCTAATATTTTGCCTTCGATCGATGAACAGAACAGAAAGCAGAATGGAGAACATTCTGGAAGTACAGACTTGCAGGATAAAAATGTTGATACTGTTGATGGATGCGATAGTTTAATCAAATTTGATAATCGTAGAAAGTTCACATATGACAGATCTGTTGGAACCAATTTGATATCGAAGGATATGAGAAGTTCCAGCCCATCAATTGATCCAAGTTCGAATAGGTTTGAGAAAGTTTATGATGATGTGGATGTAGGCCAATGTGAAATACAATGGGAGGACCTCATTATCGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACAATGCTGATTGGAATGGCACAGAGGTTGCGGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGACAACTACGCCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTCACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCATCGCCCACATTGTCAAATTGATGAAAAACGCAGAATAAAAATGGCCCTTGATGTGGCAAAGGGCATGAATTGCTTGCATACAAGTCATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCGCGCCTGAAGCACCACACATTTTTGTCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAGGTTCTCCGGAATGAGCCCTCAAATGAAAAGTGCGACGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTAAGACTACCTTGGAGTGGTATGAATCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTAGATCCCGCGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGGCCCTCATTTGCACAATTAGCCAATTTTCTTAAGCCTCTGCAGCAACTCGTCCTGCCACCGCATTCAGACCAGCCGAGTTCGTCGATGCTGCAAGAGATTTCTGTAAATTCTACACCTTGA 2841 43.89 MKHIFKKFHIGSNHEPNRPNENPLPGAASSSDNRPATAPGQISGNSPSSPSSSPLPSPSLATTPPGGGSTASVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQVDAAEALSRQYWEYNLLDYEEKVVNGFYDVLSTDSTVQGKIPSLSDIEASFGSSGFEVVMVNMTVDSALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADGIKMPCRLVKGSHYTGVEEDAVNIIKMEDEREFLVDLMAAPGTLIPADVLNAKDTTMLKPYNPKVSKISSLHYSNDVEISSTKPTPSLEESSSQNYEAEGSSLVDGKLGYGRTESVPSSSGTGTSRYKGVHSGDSNVRLNVNVVPFGQSSEDPKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTIGHPPVPLWKNRVAFNAVPKKKEYDYMEGRLPRINCGYNDHNMASSSSANSTVSESVSLCGSGTSIESNVSIRSAEVGSSSSYMHSRSTSAMIEPNILPSIDEQNRKQNGEHSGSTDLQDKNVDTVDGCDSLIKFDNRRKFTYDRSVGTNLISKDMRSSSPSIDPSSNRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYNADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVAKGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPAVARIIWECWQTDPNLRPSFAQLANFLKPLQQLVLPPHSDQPSSSMLQEISVNSTP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7932155 7942841 + Carg16493-RA Car12g00824 158440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00824 946 MobiDBLite consensus disorder prediction 366 387 - -
Car12g00824 946 MobiDBLite consensus disorder prediction 15 50 - -
Car12g00824 946 ProSiteProfiles Protein kinase domain profile. 665 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00824 946 MobiDBLite consensus disorder prediction 400 419 - -
Car12g00824 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Car12g00824 946 Pfam Protein tyrosine and serine/threonine kinase 666 917 IPR001245 GO:0004672|GO:0006468
Car12g00824 946 MobiDBLite consensus disorder prediction 366 419 - -
Car12g00824 946 MobiDBLite consensus disorder prediction 1 74 - -
Car12g00824 946 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Car12g00824 946 Pfam Ethylene-responsive protein kinase Le-CTR1 137 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01352 Car-Chr1:11967808 Car12g00824 Car-Chr12:7932155 2.27E-71 dispersed
Car10g00915 Car-Chr10:6521820 Car12g00824 Car-Chr12:7932155 0 dispersed
Car12g00824 Car-Chr12:7932155 Car13g00831 Car-Chr13:8993799 8.69E-61 dispersed
Car14g00249 Car-Chr14:1156062 Car12g00824 Car-Chr12:7932155 4.31E-36 dispersed
Car12g00824 Car-Chr12:7932155 Car09g00284 Car-Chr9:1532056 4.16E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89238 PF07714 PK_Tyr_Ser-Thr 6.50E-63 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00824 - - cpep:111793388 1817.36