Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00850 ATGGGAAACGACACCGGTTTAACTCTGGAGGGGATCAAGAACGAGACGGTTGATCTGGAGAAAATCCCCATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAACATCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGGCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTCCTTGGTTTTATGTGGAATCCCCTTTCATGGGTCATGGAGGCTGCAGCTATCATGGCCATTGCCTTGGCTAACGGAGGCGGTAAGGGACCGGATTGGCAGGACTTCGTCGGTATCGTGTGTCTGCTGGTTATCAACTCCACCATTAGTTTCATTGAAGAGAACAATGCTGGTAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCTAAGACTAAGGTTCTGAGGGATGGGAAATGGTGTGAACAAGATGCAGCAATTCTGGTACCAGGAGATGTGATTAGTGTCAAATTGGGAGACATCATCCCGGCCGATGCTCGTCTTCTGGAGGGTGATCCGTTAAAGGTGGATCAATCTGCATTGACGGGAGAATCGCTTCCGGTGACGAAGCATCCAGGGGATGAAGTGTTCTCAGGTTCAACTTGCAAACAAGGAGAAATAGAAGCTGTTGTTATTGCCACTGGTGTCCACACCTTCTTTGGAAAGGCAGCTCATCTGGTTGACAGCACCAACCAAGTTGGTCACTTCCAAAAGGTTCTCACTGCCATTGGGAACTTCTGTATCTGTTCCATTGCCATTGGTATGCTGATCGAGATCATCGTCATGTACCCGATCCAACACCGTGCCTACCGAGATGGAATCGACAATCTTTTGGTTCTCTTGATTGGAGGAATTCCCATTGCTATGCCTACTGTCTTGTCTGTCACTATGGCTATTGGATCTCACAAGTTGTCCCAACAGGGAGCTATCACCAAGAGAATGACTGCCATCGAAGAAATGGCCGGTATGGACGTCCTCTGCAGCGACAAGACCGGAACGCTCACGCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTATTTGTCAAGGGTGTCGACAAAGACCATGTCGTTCTTCTTGCTGCCCGGGCTTCTAGGACTGAAAACCAGGATGCCATTGATGCTGCCATGGTCGGTATGCTTGCTGACCCGAAAGAGGCAAGAGCTGGCATTAGAGAAGTTCACTTCCTCCCATTCAACCCTGTCGACAAGCGAACTGCCTTGACTTACATCGATTCCAACGGTAACTGGCACCGTGCTAGCAAAGGAGCTCCCGAGCAGATCTTGAGTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCTGTAATCGACAAGTTTGCCGAGCGTGGACTTCGATCGTTGGCTGTTGCTCGACAGGAAGTTCCTGAGAAAACAAAGGAGAGTCCTGGTTCTCCATGGCAATTCGTCGGTTTGTTGCCTCTTTTCGATCCTCCTCGACACGACAGTGCTGAAACCATCCGCCGAGCTCTCAACTTGGGAGTGAATGTCAAGATGATTACAGGTGATCAACTTGCTATTGGAAAGGAAACTGGCCGAAGACTCGGAATGGGAACAAACATGTACCCGTCATCTTCCTTACTCGGTCAGCACAAGGACGAAAGCATTGCTGGCCTCCCAGTTGAAGAGTTGATTGAGAAAGCTGATGGATTTGCCGGAGTGTTTCCAGAACACAAATATGAAATTGTCAAGAAGTTGCAAGAAAGGAAGCACATTTGTGGAATGACAGGAGATGGTGTCAATGATGCCCCTGCTTTGAAGAAGGCTGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCACGAGGCGCATCGGATATCGTTCTAACCGAGCCTGGATTGAGTGTTATCATCAGTGCCGTGTTGACTAGCCGAGCAATCTTCCAAAGGATGAAGAACTATACCATTTATGCAGTTTCCATCACCATTCGTATCGTGTTTGGTTTCATGTTGATCGCTCTCATTTGGAAGTTCGATTTCTCACCGTTCATGGTTCTAATTATTGCCATCTTGAACGACGGTACAATTATGACAATCTCAAAGGACAGAGTGAAGCCATCTCCATTGCCTGACAGTTGGAAACTCAAGGAGATTTTCGCCACCGGAGTAGTACTCGGTGGGTACTTGGCGTTGATGACGGTTATATTCTTCTGGCTAATGGACGGAACCGACTTCTTCACTGATAAATTCGGTGTGAGATCGATTCGTCATAACGAAGACGAAAAGATGGCTGCTTTGTACTTGCAAGTGAGTATTGTTAGCCAAGCTTTGATTTTCGTAACTCGATCACGTAGCTGGTCGTACGTCGAGCGCCCGGGACTTCTCTTAGTCAGTGCTTTCTTCATTGCACAATTGGTTGCAACTGTGATAGCTGTGTATGCTGATTGGTCATTTGCTAAGATCAAGGGCGTTGGATGGGGATGGGCTGGTGTCATCTGGCTTTATAGCATTGTTTTTTACGTTCCGCTCGATATCATGAAGTTCGCTATTCGATACATCTTGAGCGGAAAGGCGTGGGTGAGCATGTTAGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGAAAAGAAGAAAGGGAAGCTCAATGGGCACTTGCTCAAAGGACACTACATGGACTTCAACCACCCGAATCGACAAACATCTTCTCCGAAAAGAGTAGCTACCGAGAACTCTCTGAGATCGCCGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTTCGTGAGCTCAACACGCTCAAGGGTCACGTCGAGTCAGTCGTTAAGTTGAAGGGGCTCGATATCGACACGATCCAGCAGCACTACACAGTGTGA 2865 47.5 MGNDTGLTLEGIKNETVDLEKIPIEEVFEQLKCTREGLTSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDAAILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDHVVLLAARASRTENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQILSLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGSPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFTDKFGVRSIRHNEDEKMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVSAFFIAQLVATVIAVYADWSFAKIKGVGWGWAGVIWLYSIVFYVPLDIMKFAIRYILSGKAWVSMLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8294040 8300687 + Carg24213-RA Car12g00850 158466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00850 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Car12g00850 954 Gene3D - 97 818 - -
Car12g00850 954 SFLD C1.7: P-type atpase like 314 642 - -
Car12g00850 954 PANTHER PLASMA MEMBRANE ATPASE 1 934 - -
Car12g00850 954 Pfam E1-E2 ATPase 134 311 - -
Car12g00850 954 SFLD p-type atpase 314 642 IPR044492 -
Car12g00850 954 Gene3D - 329 628 IPR023214 -
Car12g00850 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 566 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 Gene3D - 135 219 - -
Car12g00850 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 850 IPR023298 -
Car12g00850 954 PANTHER CALCIUM-TRANSPORTING ATPASE 1 934 - -
Car12g00850 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car12g00850 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Car12g00850 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Car12g00850 954 Gene3D - 903 954 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Car12g00850 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Car12g00850 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
Car12g00850 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Car12g00850 954 Coils Coil 905 925 - -
Car12g00850 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Car12g00850 954 Gene3D - 344 491 IPR023299 GO:0000166
Car12g00850 954 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car12g00850 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00342 Car-Chr11:1865736 Car12g00850 Car-Chr12:8294040 0 dispersed
Car12g00275 Car-Chr12:1821076 Car12g00850 Car-Chr12:8294040 0 dispersed
Car12g00850 Car-Chr12:8294040 Car18g00122 Car-Chr18:649708 0 dispersed
Car14g01194 Car-Chr14:10464470 Car12g00850 Car-Chr12:8294040 2.01E-97 dispersed
Car12g00850 Car-Chr12:8294040 Car05g00639 Car-Chr5:3866859 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00850 K01535 - csv:101221564 1783.84