Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00870 ATGGATAACATTCTCGACGAGTATCTGAAATATTGGGAAACGGACATGTTTCTGCTGACGGAAGACTCCGGCAGCGGCGGTTGGGGACTGGAGGAAGCATTTTACGGTGCTTACAATTCGAGCTCGCCGGACGGGAAGGTGTCGCCGTCGTCGCCGTCGGAGGCGTCGAAGAATATCGTATCGGAGAGAAACCGGAGAAAGAAGCTTAACGATAGGCTTATTGCTCTCCGAGCTGTGGTCCCCAATATCACCAAAATGGACAAGGCGTCAATAATAAAAGATGCCATCGTATACATCCAAGAGTTGCGAGCGGAAGAGAAGAGAATCGAAATAGAGATTTCCGATCTGGAATCAAGCGTAAACAACAACGGATCAAGAACCACAAATCAATGGAACGACGAAAACGGAAATCGAATTTGGACGAACATGAAATGGAATCGACAAACAACTGACGCTTCATCGTCTTCCTCGATCGAAGTTCTCGATGTAATTGAGTGTGAATTACGTGGGCGAGAAGGTGATGGTGGTGAGTTTGACGTGCTTACGCCGAGGCAACACGATATTGAAGGTTTGGGAAGTGATTGA 585 47.52 MDNILDEYLKYWETDMFLLTEDSGSGGWGLEEAFYGAYNSSSPDGKVSPSSPSEASKNIVSERNRRKKLNDRLIALRAVVPNITKMDKASIIKDAIVYIQELRAEEKRIEIEISDLESSVNNNGSRTTNQWNDENGNRIWTNMKWNRQTTDASSSSSIEVLDVIECELRGREGDGGEFDVLTPRQHDIEGLGSD 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8484802 8488107 + Carg24192-RA Car12g00870 158486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00870 194 MobiDBLite consensus disorder prediction 172 194 - -
Car12g00870 194 MobiDBLite consensus disorder prediction 41 62 - -
Car12g00870 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Car12g00870 194 Coils Coil 99 119 - -
Car12g00870 194 Pfam Helix-loop-helix DNA-binding domain 60 102 IPR011598 GO:0046983
Car12g00870 194 MobiDBLite consensus disorder prediction 41 58 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00332 Car12g00870 CCT
Car10g00353 Car12g00870 CCT
Car05g00671 Car12g00870 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00870 Car-Chr12:8484802 Car20g00464 Car-Chr20:2587922 3.24E-20 dispersed
Car10g00353 Car-Chr10:1741309 Car12g00870 Car-Chr12:8484802 3.32E-38 wgd
Car11g00332 Car-Chr11:1815961 Car12g00870 Car-Chr12:8484802 4.66E-38 wgd
Car12g00870 Car-Chr12:8484802 Car05g00671 Car-Chr5:4206214 2.72E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4461 PF00010 HLH 6.60E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00870 - - csv:101203107 186.037