Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00873 ATGAGTTCATTCAAAGGCTCTCCGTTTGGAAGACGGAGTGATGTGGAGTCTGGTAGTAGCAACTCCGGTGAGCCGGAGGAGGAGGAATCATCCAATCCTTTCGCTATTCCCAGAACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTCGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAAAGAAGATTTGAAAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCGCTTTAAAGAGGCTGGGGATCGTCTAAGAGGTTCTTTAGGTTCAGGGCCTTCGAGAGCAGAAGCTCCAAATGGTGATTTTTCTGTTGGGCAAGAGCAACTGGCTGCGTTGGTAAAGGATCGTAATGTTGATAGTCTGGAGGAGCAATATGGAGGGGTTAAAGGGGTGGCAGATATGTTAGAAACGAATTTGGAGAAGGGGATAATTGGTGATGACTCTGATTTACTGAAACGAAGAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCGGCTGTTGCTTCATTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAAAATTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTTCGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATTGTGGTTGGAGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGACGGCATCTTAATTTCTGGACACTCACTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATCGTTCAAAAGCAGCATGCTAAGGACCCTTTCCTGATGTCTGGATGCAAAGTGGCTGATGGTCATGGCACTATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTCGGACTCTCAATAGCTTTCGCTGTCTTGATTGTGCTCCTCGCAAGATATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTGCAGGGCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATCGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACATTAACCCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGTTGGTGGGAAGAAGACTGATCCACCAGAGAAGAAGTCAGAGTCATCTTCCATATTATACTCCTTACTTGTTGAAGGCATTGCTCTGAACTCAAACGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGCAGAGGTTACAGGTTCGCCTACAGAAAAGGCTATTCTTAACTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATAAGAAAGGAATGTGCAATTCTTCACGTTTTCCCCTTCAGCTCAGACAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAATCAAGTTTATATACATTGGAAAGGTGCTGCTGAGATTGTCTTAGCATCGTGCACGCAGTACATGGATGAGCATGATCATTCTGTCCTACTAGATGAAGATAAGATGACATATTTTAAGAGAGCTATTGAGGATATGGCTTCGCGTAGTTTACGTTGTGTTGCACTTGCATATAGATCTTGTGAACCTGAGAATGTTCCTGACGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTGAAGGACCCCTGTCGGCCAGGAGTAAGAGATGCTGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGAATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCACTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTCCGTGCCCTGACTGATGCCCAAAGAGAAGAAATTGCTGAGAAAATATCAGTGATGGGTCGGTCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCCTTGAGAAAGAGAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGCCTTGCAATGGGTATCCAGGGGACAGAAGTTGCTAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTGAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACTGTCAATGTTGCGGCACTCATTATCAATGTCGTGGCGGCAATATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGAGCATTAGCATTGGCTACTGAACCACCAACCGATCACCTCATGGACAGGACGCCTGTTGGTAGAAGTGAACCTCTTATAACAAATATCATGTGGAGAAACCTGCTGATACAGGCATTTTATCAAGTTACTGTGTTGCTTGTCCTCAACTTTCGCGGTCGAAGTTTGCTTCATTTGAACCACTCTCATGTAGAAGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAGTTTTTAATGAATTTAATGCTCGAAAGCCAGATGAGAAGAATATATTCAAAGGAGTCAATAAAAATTACCTCTTTATTGGGATCATTGGAATTACTCTTGTGCTCCAGGTTATAATAATCGAGTTTCTGGGGAAATTCACATCCACAGTCAGACTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGTGTTATCAGTTGGCCCCTAGCTCTCCTTGGGAAATTCATACCTGTTCCCGAAACTCCCTTCCATGTGCTTATTATCAGAATGTTCCGTAAACGACGAGCTGGGAGATCGTAA 3237 43.25 MSSFKGSPFGRRSDVESGSSNSGEPEEEESSNPFAIPRTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEDLKKIRAHAQAIRAAYRFKEAGDRLRGSLGSGPSRAEAPNGDFSVGQEQLAALVKDRNVDSLEEQYGGVKGVADMLETNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVLLVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKQHAKDPFLMSGCKVADGHGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSIAFAVLIVLLARYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGKKTDPPEKKSESSSILYSLLVEGIALNSNGSVYVPESGGEAEVTGSPTEKAILNWGIKLGMNFEAIRKECAILHVFPFSSDKKRGGVAGQRDNQVYIHWKGAAEIVLASCTQYMDEHDHSVLLDEDKMTYFKRAIEDMASRSLRCVALAYRSCEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKAFRALTDAQREEIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRSEPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSHVEAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNKNYLFIGIIGITLVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRRAGRS 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8608357 8628949 + Carg22682-RA Car12g00873 158489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00873 1078 Coils Coil 69 89 - -
Car12g00873 1078 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Car12g00873 1078 Pfam Cation transporting ATPase, C-terminus 879 1055 IPR006068 -
Car12g00873 1078 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Car12g00873 1078 Pfam E1-E2 ATPase 263 465 - -
Car12g00873 1078 MobiDBLite consensus disorder prediction 1 38 - -
Car12g00873 1078 MobiDBLite consensus disorder prediction 1 28 - -
Car12g00873 1078 Pfam haloacid dehalogenase-like hydrolase 484 808 - -
Car12g00873 1078 Pfam Cation transporter/ATPase, N-terminus 143 211 IPR004014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00682 Car12g00873 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00570 Car-Chr7:2892947 Car12g00873 Car-Chr12:8608357 0 dispersed
Car08g00730 Car-Chr8:4675471 Car12g00873 Car-Chr12:8608357 0 dispersed
Car08g00731 Car-Chr8:4685824 Car12g00873 Car-Chr12:8608357 1.45E-15 dispersed
Car09g00244 Car-Chr9:1342769 Car12g00873 Car-Chr12:8608357 0 dispersed
Car12g00873 Car-Chr12:8608357 Car15g00735 Car-Chr15:4100980 2.30E-129 dispersed
Car08g00287 Car-Chr8:1816955 Car12g00873 Car-Chr12:8608357 0 transposed
Car12g01090 Car-Chr12:10654522 Car12g00873 Car-Chr12:8608357 0 transposed
Car12g00873 Car-Chr12:8608357 Car05g00682 Car-Chr5:4528221 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00873 K01537 - csv:101211703 1866.66