Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00878 ATGTACGCTGCGAAAGCCAAGAAGTCCCGTCTCAAAAATTCTTCCTTGCCTTTCCTGTTTGCAATCGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTAGTGTATTTCCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTAAAGAAAGATGTGGATGCTCAAATCCCAAACTATCCTAATCTTCCTTCTAAGTTACTATGTCTGCTTCATAATGTAACATTACATGCTGACCCAGAAACTGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACAAGCACTCATGGGGGGTTCTCCGTGCCACGCCGTGCTGCTGACAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCACCTGCACAAGAACTTGTTGCTAAGGATCTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGTCAACCGAAACGACATTTGCTGACAACCGGATGGAGCTTATTTGTTAGTGGCAAGAGACTTCTAGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAATAGGCAACCGACAAACTTGTCGTCATCGGTTTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCCGCCCATGCTGCTGCAAACAACAGCCCTTTTACTGTCTTTTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTAGCCAAATACTACAAGGCGGTGTATATGGGCACTATCACAGGTATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCGACAGGAGGAGAACGACGAAACCGAGTCTCAATATGGGAGATCGAACCGGTTATTGCTCCCTTTTTCATTTGCCCACCTCCTTTCTTTAGATCGAAACGTCCGAGACAACCAGGAATGCCAGATGATGAGTCCTCTGATTTGGATAGCATATTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCGCAGGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTCTCTAATATGCAGCCAAATTATATGCATTCATTTTCTGGATCTATGCTTCCGAACCTCGGCGGAGTCGATATTTCTCGACAACTTGGCATGTCGAATGCACAAAATCCTCAATCGAATAACATACAGTTCAATGCACAAAGGCTACTTCCTCAAGCTCAACAGTTAGATCAGCTACCTAAGATACCGTCGACTATGAACTCAATGGCATCCGTCGTGCAGCCACCGCAACAGTTCGATGATATCTCTCAACAGACAAGGCAGAATGTCGTCTCAAGCCAGATTCAGTCTCAGATAATGCAGCAGCCTCATGGTAATGGGATCTTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAAAGAAGCCTCCCTCAGAACATGCTAATGCAGCAGCATCAGCAAATTTTGGGGCAGAATCAACAGCAGAATATGAACCAACCACCGATCCCGGATCAGTCGAATCATGCATTGCAAATGTCTGATAATCAGATTCAAATGCAGATGTTGCAAAAGTTTCAGCAACAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTCTTCAGCCTGCTCAACTTGCCCAACTCCCGGAACAGCAGAGCTTTTCGATATCCATGTCGACTAACCAAATGATCGATGTACCTCACTCTGCCCCAGCTGCAGGCCCTCCTCCATCAGCACAGCAGGCACCAAAGAGCCATAGCTCAAATCAGCATTTGCAGCCAAAATTTCCACAGTTACAGCAACAGCCTCATGATATGTCTAGGCCAATGGGACATAACAATCAGTTCTCTGCAGCTACTAGTAGCGCAATAACAGGAGCAGCAGGGGCAGGTCAATCAGGAATCACTGATGACATACCATCATGCTCCACATCTCCTTCCACAAACAACTGTCCAAGTTTGGTTCAACCTGTAACGAACGGACGCTTACATCGAACCACCGGATTAGTCGACGATGTTGCTCAATCTGCTGCTACAATATTCAGTACCAACACCTTGGATAGCATATCACCAAATGCCAACTTGGTTAAAAACATACCACACAAGGCTGCTGTTAAACCTTCACTGAATATCTCCAAGAATCAAAGCCATGGAGTTTTGACACAACAGACCTTCTTGACCGGTGCTGTTCCACAGACAGAGTTCTTGGACACGTCGTCGTCGACAACGTCGGCTTGTCTTTCTCAGAATGATGCTCAGCTGCAGCAGAATAACATAATGTCTTTCAACTCACAGCCTATGTTGTTTAGAGATGGTTCACAGGATTTGGAGCCACCAACGGATCTTCATAACATTCCTTATGGGACTAATGTTGATGGACAATTGGTAGCACATTTAAATTCAGATCCTTTGATGAACAAAGGCATTGGAGGGTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGAGACATGCTTGCCACATACGACGCACAGAAAGATCCTCAACAGGAAATCTCTTCTTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTCAACTCCATGGACTCAACTATAAACGACAGTTCCTTCTTAAATAGAAACCAATGGGCCCCTCCGCCTCCTTTTCAACGTATGCGAACCTATACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCTATTGATATTACTCGCTACTCGGGCTACGATGAGCTTAAACAAGATCTCGCCCGTCGCTCAAAGTTCATAGCTTCATATATCACTTCGGCTACGATTTCCTGTTAG 2970 45.08 MYAAKAKKSRLKNSSLPFLFAIGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAADKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFFRSKRPRQPGMPDDESSDLDSIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNMQPNYMHSFSGSMLPNLGGVDISRQLGMSNAQNPQSNNIQFNAQRLLPQAQQLDQLPKIPSTMNSMASVVQPPQQFDDISQQTRQNVVSSQIQSQIMQQPHGNGILQQQTSLQNQQLQRSLPQNMLMQQHQQILGQNQQQNMNQPPIPDQSNHALQMSDNQIQMQMLQKFQQQQQSLLAQQSVLQPAQLAQLPEQQSFSISMSTNQMIDVPHSAPAAGPPPSAQQAPKSHSSNQHLQPKFPQLQQQPHDMSRPMGHNNQFSAATSSAITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRLHRTTGLVDDVAQSAATIFSTNTLDSISPNANLVKNIPHKAAVKPSLNISKNQSHGVLTQQTFLTGAVPQTEFLDTSSSTTSACLSQNDAQLQQNNIMSFNSQPMLFRDGSQDLEPPTDLHNIPYGTNVDGQLVAHLNSDPLMNKGIGGLGKDFSNNFSSGDMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSSFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRSKFIASYITSATISC 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8687736 8695440 + Carg22677-RA Car12g00878 158494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00878 989 ProSiteProfiles PB1 domain profile. 941 989 IPR000270 GO:0005515
Car12g00878 989 MobiDBLite consensus disorder prediction 685 713 - -
Car12g00878 989 MobiDBLite consensus disorder prediction 694 713 - -
Car12g00878 989 MobiDBLite consensus disorder prediction 623 651 - -
Car12g00878 989 MobiDBLite consensus disorder prediction 546 567 - -
Car12g00878 989 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Car12g00878 989 Pfam Auxin response factor 263 298 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car12g00878 989 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01348 Car-Chr5:12143560 Car12g00878 Car-Chr12:8687736 0 dispersed
Car12g00878 Car-Chr12:8687736 Car13g00401 Car-Chr13:6546260 7.94E-163 dispersed
Car12g01299 Car-Chr12:12002386 Car12g00878 Car-Chr12:8687736 4.40E-35 dispersed
Car18g00462 Car-Chr18:2973511 Car12g00878 Car-Chr12:8687736 4.56E-152 dispersed
Car12g00878 Car-Chr12:8687736 Car05g00686 Car-Chr5:4583465 4.73E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4462 PF02362 B3 8.60E-20 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00878 - - csv:101205542 1502.65