Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00884 ATGGCCAGAGGCGGAGCTCACAAGAAAGACGAATCCGTAGCGGTAGCGATCGATAAAGACAAATTCAGTCAACAGGCTTTGAAATGGACGATTGAACGGCTTCTTAGCAGAGGCCAAGTTCTTACTCTGCTTCACGTCAAACACAAACCGTCGCATTCGACGACGAACGTCGGTTCCAATTCCGATTCGGATGACGCCGTTGCTCATAAACAGCAGGTTGATAATCAAGCCCATCAGTTCTTCCTCCCCTTTCGTTGCTTCTGCACGCGAAGCAATATACCATGCAATGAAGTGACGTTGGAGGAGGGAGATATTTCAAAAGCATTAATCAATTATGTCAACAAAAATGTTATTGACGTTTTAGTCCTTGGTGCTCCTTCAAGAACTGGCCTTGTCAAACGATTCAAGTCGGACATCCCAAGTATCGTGTCGAAAGGAGCACCAGACTTCTGCACAGTTTACATTATTGGCAACAAAGGCAAGGTCTCTTCAATGCGACAAGCTACATCTCCAGCACCTGCAAAGCCTATTTCTACGTCGCACAACCAGCCACAACCCGCCACACGCCCTCAATTGTTGCATCAGCTCACCAACGCCTCCGAGGTATCAGTCGAGCACCCGATCATCCTGCGCTCCCAACCTTCCAGACGACAGGACACATCCACGGCGGATTCCGACATATCGTTCGTGAGCAGCGGTAGGCAGAGCTTAGATCGTGGGAACTCGCCGGCGTGGAACTCCGGCACCGGGGACTTGTATCGGCTTTCAAACGGGTCGGGCTCGGAGTTTGAAACTTCGAGCCCGGGTTCAGCCTCGCCTTCGCCCATGTTGGGAATGGGAGGAATGAGGTCCATTGATAGTAACAATAACTCCTCTTATTCTAACCCTTACTCTCATGAAATGTCCTCTGCCTCGGAGAGTGAGACCTCTTGGGCTTCCCAATCTCATGCTCAGGAGGATGTTGAGGCTGAGATGAGGAGGCTGAAATTGGAGCTCAAACAAACCATGGACATGTACAGTACAGCCTGCAAAGAAGCCCTAAACGCCAAGCAAAAGGCGAGTGAGCTCCATCGCTGGAAAATCGAAGAAGAACACAGACTCGAAGAGGCAAGAATGGCGGAAGAAGCAGCATTAGCAATAGCAGAGCAGGAGAAGTTGAAATGCAAAGCGGCATTGCAGGCAGCCGAAGTTGCACAAAGAAGCGCAGTTCAGGAAGCGAGGAAAAGAGCAAACGTCGAGAAACTTGCTGTCATGGAAGCAGAGGAAACCAAAAAAGCGCTTGAAGGATTCGGCCATGGCGATATCGGTTACAGAAGGTACTCGATCCAGGAAATCGAAACCGCTACGAATGGCTTCTCTGCTGCTTTGAAGATCGGTGAAGGCGGTTATGGTCCAGTTTACCGTGGAGAACTCGACCACACGCAGGTAGCGATTAAGGTCCTCCGTCCGGATGCCGCTCAAGGCAGATCGCAATTTCAGCGAGAGGTTGAGGTTTTAAGTTGTATTCGACATCCAAATATGGTTCTCCTCCTTGGAGCTTGTCCTGAGAACGGTTGTTTAGTTTACGAATTCATGGCGAACGGAAGCTTAGAGGACTGTCTCTTCCGAAAACCAGAGAATCCTGTTCTTCCATGGCAGTTACGTTTCCGAATCGCGGAGGAAATCGCGACCGGACTTCTTTTCTTGCATCAAACCAGACCAGAGCCGATCGTGCATCGAGATCTGAAACCAGGAAACATTTTGCTAGATCGGAACTACGTGAGTAAAATCAGCGACGTAGGACTGGCGAGGCTTGTGCCTCCATCGGTAGCGAATTCGGTGACTCAGTATCGAATGACGGCGACGGCAGGGACTTTCTTCTACATCGATCCAGAGTATCAGCAAACAGGATTGCTAGGGATTAAATCAGATGTTTACTCGCTTGGTGTGATGCTTTTGCAAATAATCACGGCGAAGCCGCCAATCGGACTAGCGCATAACGTGGAGAGAGCGATTGAGAAGGGGAAGTTTGCGGAGATGCTTGATCCGGATGTGAAGGACTGGCCGGTTGAAGAGGCGTTGAAGTTTGCGAAGCTTTCGATTCAATGTGCAGAGATGAGGAAGAGAGATCGGCCGGACCTTGGGAAGGTGGTGCTCCCGGAGCTTAGTCGATTGAGAGCCATGGCGGAAGAGAGTATGGGATTTCAACCGTACAGTATCTGTGATTCGCCATGTATGAGCCAGGCTTCCTTTTCACAGGTAAGTTCGCTTCTCTTTTTCTTCGCCATTAAT 2271 49.89 MARGGAHKKDESVAVAIDKDKFSQQALKWTIERLLSRGQVLTLLHVKHKPSHSTTNVGSNSDSDDAVAHKQQVDNQAHQFFLPFRCFCTRSNIPCNEVTLEEGDISKALINYVNKNVIDVLVLGAPSRTGLVKRFKSDIPSIVSKGAPDFCTVYIIGNKGKVSSMRQATSPAPAKPISTSHNQPQPATRPQLLHQLTNASEVSVEHPIILRSQPSRRQDTSTADSDISFVSSGRQSLDRGNSPAWNSGTGDLYRLSNGSGSEFETSSPGSASPSPMLGMGGMRSIDSNNNSSYSNPYSHEMSSASESETSWASQSHAQEDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKASELHRWKIEEEHRLEEARMAEEAALAIAEQEKLKCKAALQAAEVAQRSAVQEARKRANVEKLAVMEAEETKKALEGFGHGDIGYRRYSIQEIETATNGFSAALKIGEGGYGPVYRGELDHTQVAIKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKPENPVLPWQLRFRIAEEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDVYSLGVMLLQIITAKPPIGLAHNVERAIEKGKFAEMLDPDVKDWPVEEALKFAKLSIQCAEMRKRDRPDLGKVVLPELSRLRAMAEESMGFQPYSICDSPCMSQASFSQVSSLLFFFAIN 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8744495 8750573 - Carg22671-RA Car12g00884 158500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00884 757 MobiDBLite consensus disorder prediction 165 188 - -
Car12g00884 757 Coils Coil 364 384 - -
Car12g00884 757 Coils Coil 403 423 - -
Car12g00884 757 Pfam Protein tyrosine and serine/threonine kinase 457 710 IPR001245 GO:0004672|GO:0006468
Car12g00884 757 MobiDBLite consensus disorder prediction 283 317 - -
Car12g00884 757 ProSiteProfiles Protein kinase domain profile. 452 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00884 757 MobiDBLite consensus disorder prediction 203 320 - -
Car12g00884 757 Pfam Universal stress protein family 13 135 IPR006016 -
Car12g00884 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Car12g00884 757 MobiDBLite consensus disorder prediction 213 273 - -
Car12g00884 757 Coils Coil 318 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00562 Car-Chr5:3296013 Car12g00884 Car-Chr12:8744495 0 dispersed
Car12g00884 Car-Chr12:8744495 Car16g00601 Car-Chr16:3847962 0 dispersed
Car12g00884 Car-Chr12:8744495 Car05g00690 Car-Chr5:4640641 6.55E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89239 PF07714 PK_Tyr_Ser-Thr 1.70E-38 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00884 - - csv:101203771 946.421