Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00887 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTGAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACTCGTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCTGTTGCTATGTCTTTAGATAACAGCAGTGTGGGATCAAATGAATCTCACACTCGGATCTTAAATCACCAAGGTTTGCGACGGCGTGCAAATGACAACCAGACTTTTCAACATAGCGTTAACCGTCGTGGAAGAGTTACACACCACCTGAGTGATGATGCACTGGCCCGAGCTTTATTTGATACTAATACACCTACCCAGGGTCTTGAAAATTTTGAGAAGTGGATTCTTGATTTAAGGAAGCTCAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTGTACAGAGGTACTTATGATGGGGAAGATGTTGCTATCAAGATCTTGGAGAGGCCTGAGAATGACCTGGAGAAGGCCCAGTTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAACATTGTCAGGTTTATTGGAGCATGTCATAAGCCAATGGTTTGGTGCATTGTTACCGAATATGCAAAGGGTGGTTCAGTTCGACAGTTCCTGATGAAGCGACAAAGTCGCTCTGTCCCCCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGAGGGATGGAATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCAGACAATCTTTTGATTTTTGCAGATAAGTCCATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAAGTGCAGACTGAGGGAATGACACCCGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACTCAAAAGGTGGACCTGTACAGCTTTGGCATAGTTCTCTGGGAGCTGATAACTGGAATGCTTCCATTCCAGAACATGACTGCCGTTCAGGCCGCCTTTGCAGTTGTCAACAAGGGTGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGCGACATCATGACCCGATGCTGGGATGCGAACCCCGATGTTAGACCATCATTTACTGAGGTTGTCAGAATGCTTGAGAATGCACAGAATGAGATCATGACGACCGTGCGCAAGGCTCGTTTCAGGTGTTGCATGAGGCAGCCAATGACAACAGACTGA 1242 46.38 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNQTFQHSVNRRGRVTHHLSDDALARALFDTNTPTQGLENFEKWILDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQNEIMTTVRKARFRCCMRQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8769246 8772147 - Carg22668-RA Car12g00887 158503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00887 413 PANTHER SERINE-THREONINE PROTEIN KINASE 2 404 - -
Car12g00887 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Car12g00887 413 ProSiteProfiles Protein kinase domain profile. 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00887 413 SMART serkin_6 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00887 413 CDD STKc_MAP3K-like 139 386 - -
Car12g00887 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Car12g00887 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
Car12g00887 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Car12g00887 413 Gene3D Transferase(Phosphotransferase) domain 1 215 410 - -
Car12g00887 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 404 - -
Car12g00887 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Car12g00887 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Car12g00887 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Car12g00887 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Car12g00887 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00887 Car-Chr12:8769246 Car18g00156 Car-Chr18:842274 5.74E-100 dispersed
Car19g00592 Car-Chr19:7307944 Car12g00887 Car-Chr12:8769246 2.14E-86 dispersed
Car12g00887 Car-Chr12:8769246 Car05g00693 Car-Chr5:4686215 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89240 PF07714 PK_Tyr_Ser-Thr 9.30E-66 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00887 - - csv:101213713 818.92