Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00907 ATGAACTGGAATCGTGAATCGATGGAGCCTGAAAATAGGTTATGTAGCTCTGAAGTTTGGGCAAAATCTTCATCGTTTCCTAATATTAATGTTCAGCAACCTTCACAGAAATGGGTAGATCCTTCCATTTTAGACTATGATATGGAACAACCTTTCCAAGAATTCGAAGAACGGATCGAATCGAAGGCCTCCCTAACGTGTAGCCCGAATCAACGAATCGAAATCTTAGATAAAGATAGTAATGAGCTGAATGCAGGACTTCTAGCTAGTAAAATTCAAGATTGGGACCCGAGAGCGATGCTGAATAATCTTTCATTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTTGGCCGGAGGAACCAAGCCTTGGGGAGTCCCGATGAACTCGTAGTTCAGCAACAACAGCTGATAACGGCTGATCTAACTTCGATTATTGTTCAGTTAATCTCGACAGCTGGTAGTCTGCTTCCTTCTGTAAAGCATAAGTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGCTTGAGCAACTCGAGCAGCTCGACAGGGTTCTTTTTGCGTCTGGACCTAGGACTAATAGTGGTGATGGAACCAAACTCCCTGAGCTTCCAACCCAAGTAGAGGAAAGTAGCAAATGTGGGAAGGAACAGAACATGGCTGTTGAAGAACACGAATCAAAGGACGAAGAAGACGCCGATGAACACGAGAATCTCCCGCCCGGTTCATACGAAATACTGCAGCTAGAAAAAGAAGAGATTCTAGCACCTCACACACATTTCTGTCCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCACGGTGACGAGTATAAAACCGCAGCTGCCCTAGCTAAACCGAACAAAGAGTCGAGTTCCGAGACGATGCTAATCAAGAGATATTCCTGTCCGTTCACCGGCTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACCATTCTCTGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTTCACTTGCAGCAAATGTAACTCTAAGAAATTCTCTGTAATTGCTGATCTGAAAACACATGAGAAACACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACAACGTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCGATTCCGCTCGACGAGTCGAAGGGAGCAGCCGTGTCGTTCGATCGAGGAGAACGCTCGGATAAGCTTAGGAGCCTAAATTTCAGTTTCGGGTCGATTGCTACGGGTGGAAGCTCTGTTGAAACCATAGCAGATGCAAAAGCTGGTGTTGATGATCCTCTTGGTTGTTTTTCACCTCTGAACTTCGAATCGTGTAATTTCGAGGGGTTTCACGAGTTTCCTCGACCGCCATTTGAGAATGTAGACAATGTGTTTTCATTCCTTAGCCCGGGGTCGGGTAATTACACCGAAAAATCTGGTGCGGAATCGAGCTCTAATAACCTTGAATGA 1542 45.14 MNWNRESMEPENRLCSSEVWAKSSSFPNINVQQPSQKWVDPSILDYDMEQPFQEFEERIESKASLTCSPNQRIEILDKDSNELNAGLLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRNQALGSPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHKLSAAVPPVGQLEQLEQLDRVLFASGPRTNSGDGTKLPELPTQVEESSKCGKEQNMAVEEHESKDEEDADEHENLPPGSYEILQLEKEEILAPHTHFCPICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAAVSFDRGERSDKLRSLNFSFGSIATGGSSVETIADAKAGVDDPLGCFSPLNFESCNFEGFHEFPRPPFENVDNVFSFLSPGSGNYTEKSGAESSSNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9003008 9005913 + Carg22648-RA Car12g00907 158523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00907 513 MobiDBLite consensus disorder prediction 219 242 - -
Car12g00907 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Car12g00907 513 MobiDBLite consensus disorder prediction 191 243 - -
Car12g00907 513 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00838 Car-Chr1:6606177 Car12g00907 Car-Chr12:9003008 0 dispersed
Car03g00740 Car-Chr3:6314253 Car12g00907 Car-Chr12:9003008 7.48E-73 dispersed
Car12g00907 Car-Chr12:9003008 Car13g00196 Car-Chr13:2240416 8.44E-74 dispersed
Car12g00907 Car-Chr12:9003008 Car07g00486 Car-Chr7:2426305 1.61E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4464 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00907 - - csv:101220745 917.916