Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00940 ATGGCCACTCTTTCCTGCCAACCCTCCGACTTGGCCACCCTCCTCGGCTCGACCGCCACCGCCAACTCCTCCGCCGTGGCCGACTACCTCTGCTCGAGGTTCAACACAGTCGCCGCTACTCTCACGTCCACCTCCTACGCCCTCGACAACACCTACCTTCTCTTCTCAGCCTACCTCGTCTTCGCCATGCAACTCGGCTTCGCCATGCTATGCGCTGGCTCGGTCCGTGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTCGTACTACCTCTTCGGCTTCGCCTTCGCCTTTGGTGCCCCTTCTAACTCCTTCATTGGCCGCCACTTTTTTGGCCTCTCCCATTTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTTTACCAATGGGCCTTTGCCATTGCTGCCGCAGGCATCACAAGCGGTTCAATAGCCGAGCGAACCCAATTCGTAGCCTACCTCATTTACTCGACCGTCCTAACCGGTTTTGTCTACCCCATAGTCTCCCACTGGTTCTGGTCGGCCGATGGCTGGGCTAGCGCAGCTCGGCCCAGTAACCTCCTATTCAACTCGGGCGCAATCGACTTCGCTGGGTCAGGCGTGGTCCACATGGTCGGCGGCATAGCCGGCTTGTGGGGAGCCTTAATCGAAGGCCCACGAATCGGCCGATTCGACCGTTCAGGCCGGTCCGTAGCTCTACGTGGTCATAGCGCTTCCTTAGTCGTCCTCGGTTCATTCCTCCTCTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCGTTTCTAACTATCTCCAAATCCTACAACGACGGCCGCCCCTATTACGGTCAATGGAGCGCCATAGGCCGAACCGGAGTCACCACAACATTAGCCGGATGTACAGCCGCGCTAACAACGCTCTTCTCAAAACGGCTGTTAGTTGGACATTGGAACGTAATCGACGTGTGCAACGGCTTATTAGGTGGCTTCGCAGCCATCACAGCCGGATGCGCCGTAGTGGACCCATGGGCGGCTGTGATATGTGGATTCGTAGCGGCTTGGATTCTAATTGGCTTCAACAAGCTAGCCGAGAAGTGCAGCTACGATGACCCATTAGAGGCAGCGCAACTCCACGGCGGATGTGGCGCGTGGGGGTTGATATTCACGGGATTATTCGCGAGAAAGGAGTACGTGGCGGAGGTTTATAAGGCAGGGCGGCCGTTTGGGTTGTTTATGGGCGGCGGAGGGAGGCTACTGGCGGCGCAATTGGTGGAGATAGCGGCGATTGTGGGGTGGGTGTCGGTGACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGCGAAATTGCTGAGGATATCGAGGGAGGATGAGATGGCAGGGATGGATATGACGAGGCATGGGGGGTTTGCTTACGTGTACAATGACGAGGATGATCCGTCTGGGAAGCCGGCTGGGTTTATGCTGAGGAGGATTGAGCCAGCCGATGGGAGTCCTAGTCCTGTTGACGACCGTTATCCTTCTGGGATGGCTGCCGTTTGA 1542 57.26 MATLSCQPSDLATLLGSTATANSSAVADYLCSRFNTVAATLTSTSYALDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSHFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSADGWASAARPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITAGCAVVDPWAAVICGFVAAWILIGFNKLAEKCSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYKAGRPFGLFMGGGGRLLAAQLVEIAAIVGWVSVTMGGLFYGLKKAKLLRISREDEMAGMDMTRHGGFAYVYNDEDDPSGKPAGFMLRRIEPADGSPSPVDDRYPSGMAAV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9469764 9472175 - Carg23463-RA Car12g00940 158556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00940 513 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Car12g00940 513 MobiDBLite consensus disorder prediction 492 513 - -
Car12g00940 513 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01463 Car-Chr2:9555598 Car12g00940 Car-Chr12:9469764 0 dispersed
Car12g00940 Car-Chr12:9469764 Car14g01662 Car-Chr14:13259126 0 dispersed
Car12g00940 Car-Chr12:9469764 Car08g00916 Car-Chr8:6158119 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00940 K03320 K07573 csv:101222356 891.723