Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00952 TTCCCACTTTCCCCCCATTTCGACCCTTCCTTCGATCATTCCCATTTTTTCACCTCCATTCTTCTTCATCACTCCCTCAATTTGAATTTCACCTGCGTCGATTTTGGTGCAAAACTGGTCTCAGTGTTAATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCCTTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACGTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCCGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAGAAGGCGCTCGCAGATCTCCATCAAATGCAAACCGTGCATGTAAGTCGATGCACCCTCAATATTGTGGATTAG 1389 44.56 FPLSPHFDPSFDHSHFFTSILLHHSLNLNFTCVDFGAKLVSVLMESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPPSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHVSRCTLNIVD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9609823 9628844 - Carg23475-RA Car12g00952 158568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00952 462 Pfam Zinc finger, C3HC4 type (RING finger) 190 225 IPR018957 GO:0046872
Car12g00952 462 Pfam IBR domain, a half RING-finger domain 259 321 IPR002867 -
Car12g00952 462 Pfam IBR domain, a half RING-finger domain 338 386 IPR002867 -
Car12g00952 462 ProSiteProfiles TRIAD supradomain profile. 186 399 IPR044066 -
Car12g00952 462 MobiDBLite consensus disorder prediction 52 82 - -
Car12g00952 462 ProSiteProfiles Zinc finger RING-type profile. 190 234 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00187 Car-Chr8:1172637 Car12g00952 Car-Chr12:9609823 0 dispersed
Car12g00952 Car-Chr12:9609823 Car20g00750 Car-Chr20:4397091 1.88E-52 dispersed
Car12g00952 Car-Chr12:9609823 Car17g00550 Car-Chr17:5131842 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00952 K11968 - csv:101218052 772.696