Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00952 TTCCCACTTTCCCCCCATTTCGACCCTTCCTTCGATCATTCCCATTTTTTCACCTCCATTCTTCTTCATCACTCCCTCAATTTGAATTTCACCTGCGTCGATTTTGGTGCAAAACTGGTCTCAGTGTTAATGGAATCGGAGGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCCTTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACGTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCCGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATCTTGAAGAATAGTGCCGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAGAAGGCGCTCGCAGATCTCCATCAAATGCAAACCGTGCATGTAAGTCGATGCACCCTCAATATTGTGGATTAG 1389 44.56 FPLSPHFDPSFDHSHFFTSILLHHSLNLNFTCVDFGAKLVSVLMESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPPSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHVSRCTLNIVD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9609823 9628844 - Carg23475-RA Car12g00952 158568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00952 462 Pfam Zinc finger, C3HC4 type (RING finger) 190 225 IPR018957 GO:0046872
Car12g00952 462 Pfam IBR domain, a half RING-finger domain 259 321 IPR002867 -
Car12g00952 462 Pfam IBR domain, a half RING-finger domain 338 386 IPR002867 -
Car12g00952 462 ProSiteProfiles TRIAD supradomain profile. 186 399 IPR044066 -
Car12g00952 462 MobiDBLite consensus disorder prediction 52 82 - -
Car12g00952 462 ProSiteProfiles Zinc finger RING-type profile. 190 234 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00952 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00187 Car-Chr8:1172637 Car12g00952 Car-Chr12:9609823 0 dispersed
Car12g00952 Car-Chr12:9609823 Car20g00750 Car-Chr20:4397091 1.88E-52 dispersed
Car12g00952 Car-Chr12:9609823 Car17g00550 Car-Chr17:5131842 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00278 . 164 590 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Car20g00750 . 164 593 ARIADNE family AT4G34370 71.2 2.8e-180 628.6
Car02g00278 . 58 527 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Car20g00750 . 58 544 ARIADNE family AT2G16090 76.7 2.4e-223 771.9
Car20g00750 . 33 543 ARIADNE family AT3G27710 61.6 2.4e-184 642.5
Car02g00278 . 36 522 ARIADNE family AT3G27710 62.4 5.9e-183 637.9
Car02g00278 . 47 522 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Car20g00750 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Car17g00550 CST 113 587 ARIADNE family AT1G05890 72.8 6.9e-217 750.7
Car08g00187 CST 56 524 ARIADNE family AT1G05890 73.6 9.0e-217 750.4
Car12g00952 . 69 450 ARIADNE family AT1G05890 63.4 2.8e-162 569.3
Car08g00187 CST 16 584 ARIADNE family AT1G65430 69.6 8.2e-244 840.1
Car17g00550 CST 68 594 ARIADNE family AT1G65430 72.8 2.0e-237 818.9
Car12g00952 . 69 455 ARIADNE family AT1G65430 76.6 4.3e-184 641.7
Car08g00187 CST 53 449 ARIADNE family AT2G31780 57.6 5.8e-144 508.1
Car17g00550 CST 110 506 ARIADNE family AT2G31780 58.4 7.5e-144 507.7
Car12g00952 . 67 453 ARIADNE family AT2G31780 53.6 1.9e-126 449.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00952 Car_Chr12 FPKM 2.254818 2.342882 2.871838 3.27569 3.872493 3.419551 4.997086 5.67539 7.841435 7.380494