Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00953 ATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACACTCCGACCACCATCACGGCGGCGGCGGCGGTGGCAGCGTTGGCGGTGATGGTCCTTTCACCTCCGACAACATCTCCGGCTCCGCCGTCTGTTTTGACAACCTCCCCTCTTCCTACGGCGTCTATGAACCCTTCCACCGCAATAATCACTCTCAAGATTGGAACAATCTTAAGGGTTTAGGGTCAGCTCAAAGTTCGGATTTTTCTGCGTTAATCGAAACCCAACAGCCACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGTCGTCTACACCAATGCTTCCGGCAACTACATGTTCCAAAATTGTTCCTTGGAGCTTCCATCTGATCCGGCAAACTGCGGCGGTGGAAAAGCCAACGATAACGGCAACAATAATGGTAGCTCTATTGGGCTGTCTATGATGAAGACGTGGCTGAGAAATCAACCTGCGCCGCCGCAAGCGGTGGCGCAGTATGGCGGAGATCACGACGGTGCGGTTAGATCAGGTAATATCACAAACGCACATAGTTTATCGCTGTCGATGAACACTGGACCACCGGCGGCGGCTCTGCCACTTCTGACGGCAAACGGTGGCGGAAGTGGCGGCGAAAGCTCCTCCTCCGATAACAAACAAGCTAAATCAGCCTCTGCGGAAATGGACGGTGAAAACGGCGCCGTTGAAGCTGTACCTAGAAAATCTATTGACACATTCGGCCAAAGAACTTCCATATACCGTGGTGTAACCAGACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGCAGACGAGAAGGACAAACAAGAAAAGGAAGACAAGGTGGCTATGACAAAGAAGAAAAGGCTGCAAGAGCCTATGATTTAGCAGCTCTGAAATATTGGGGCTCCACCACCACCACCAATTTTCCAATTAGTGATTATGAGAAAGAAATGGAAGATATGAAGCATATGACAAGGCAAGAATTTGTAGCGTCTCTAAGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCTTCCATTTATCGTGGAGTAACGAGACACCATCAGCACGGGAGATGGCAAGCGAGAATAGGGCGAGTTGCTGGGAACAAAGATCTCTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCAGAAGCATATGACACGGCGGCGATAAAGTTCCGGGGACTAAATGCGGTGACCAACTTCGATATGAGTCGTTATGACGTTAAAGCCATTCTCGAAAGCAATACATTACCTATCGGTGGTGCTGCAAAGCGTTTAAAAGATATCGTTCATTCTGATATTGATCCACAACGAAGCGATGAGAACATAAGTTCGCACATTTCTGATGGAATAATCACCGCTGCCGCCGCCCCTTATGGTGGCGGTGGATGGCCAAGTCTTGCCTTCCACCACCATCCGTACGCCTTCCACTACCCGTACGCCGCCACACAGCAACGACTATGGTGCAAGCAAGAGCACGACGCCACCGTCGCCGCTGCAGACAACTTCTTCCCACACGGCGGAGCCATGGACTCAATGGATCATGGGGTTTACAGCGGGGGTGGAAGCGGAGACGGGTATGGCGGGAACTTCCTGATTTCGATGGCGGCCGGGGTGGAAGCCGGGAGCAGCAGCAGCAACAACAATGGTGGTGGGTTGGGAGAAATTGGAGAAGTGAATTTGTTTGGATGTTCTTCTAACGTGGATGATCCATACCATGCAACAAGAACCACCACCAATTTGTACGATTATAACAATTCCTCTCATCATCTGCCACCGCCCACGACGGCGCTACAGCAATGCAACAACTGGCTTCCACCAGCCCGGACGGTTTGTCACGGCGGAGCTCCGCCGCCTTTCACCATATGGAATGACACTTAA 1926 51.14 MGSMNWLGFSLSPQEQHSDHHHGGGGGGSVGGDGPFTSDNISGSAVCFDNLPSSYGVYEPFHRNNHSQDWNNLKGLGSAQSSDFSALIETQQPPKLENFLGHHSFTDHDHAVVYTNASGNYMFQNCSLELPSDPANCGGGKANDNGNNNGSSIGLSMMKTWLRNQPAPPQAVAQYGGDHDGAVRSGNITNAHSLSLSMNTGPPAAALPLLTANGGGSGGESSSSDNKQAKSASAEMDGENGAVEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGSTTTTNFPISDYEKEMEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDTAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIVHSDIDPQRSDENISSHISDGIITAAAAPYGGGGWPSLAFHHHPYAFHYPYAATQQRLWCKQEHDATVAAADNFFPHGGAMDSMDHGVYSGGGSGDGYGGNFLISMAAGVEAGSSSSNNNGGGLGEIGEVNLFGCSSNVDDPYHATRTTTNLYDYNNSSHHLPPPTTALQQCNNWLPPARTVCHGGAPPPFTIWNDT 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9641161 9644910 + Carg23476-RA Car12g00953 158569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00953 641 MobiDBLite consensus disorder prediction 215 233 - -
Car12g00953 641 MobiDBLite consensus disorder prediction 1 35 - -
Car12g00953 641 Pfam AP2 domain 359 409 IPR001471 GO:0003700|GO:0006355
Car12g00953 641 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Car12g00953 641 ProSiteProfiles AP2/ERF domain profile. 260 323 IPR001471 GO:0003700|GO:0006355
Car12g00953 641 MobiDBLite consensus disorder prediction 207 242 - -
Car12g00953 641 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00209 Car-Chr8:1296792 Car12g00953 Car-Chr12:9641161 1.56E-06 dispersed
Car12g00555 Car-Chr12:3699394 Car12g00953 Car-Chr12:9641161 2.92E-115 dispersed
Car12g00953 Car-Chr12:9641161 Car20g00058 Car-Chr20:321250 1.66E-129 dispersed
Car04g00802 Car-Chr4:4641132 Car12g00953 Car-Chr12:9641161 1.46E-120 transposed
Car11g00359 Car-Chr11:1969480 Car12g00953 Car-Chr12:9641161 5.40E-126 transposed
Car12g00953 Car-Chr12:9641161 Car05g00741 Car-Chr5:5415780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4468 PF00847 AP2 2.60E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00953 K09285 - csv:101219473 944.495