Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00981 ATGGAAGAGTTTTACAGGCTCAACAGCTCTGTTATATCCTCATACACTAATGGAGTTGTTGCTAGTGAGGCCATTGCAAGCACTAGCTCTGGTGGAGTTCATGGAGCTCAAATGATGAACAATGAAATGATTCAGCTGGAAGCTGAGACCACTACTGGCTTGAACATGTCTGAAATCATCAAAACTCAAATTGTCAACCATCCCCTTTATTGCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTCCTGGGTCATGTATTGAGCTGGGAGCTGATCCTCAACTCGACAACTTCATGTCATACTGTGAAGTTCTTCATCAATACAAGAATGAGCTAACCAAGCCATTTAATGAAGCAACAATGTTCTTAACCAACATTGAATTGGAGCTGAGCAACCTATGTAAAGGATCATTTACCGCAACGTCGGATTCTCGTCCCGCCACGAATGACGAAGTAGCTGAGACGCTAGAGGACGAACCGAGCAGCTATCGGGAAGTCGAGATGCCGGGAAATCACGAGCCATTCGGCACGAGACAAACAAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTAAGCAGTTTGAAGAAGGATTTCCTTAAAAAAAGGAAGAAAGAGAAGCTTCCAAAGGATGCAAGAATGGCTTTATTTGATTGGTGGAACACTCATTACAAATGGCCATATCCCACGGAAGAGGAAAAATCAAAACTTTCTGGTATTACTGGTTTGGATCAGAAGCAGATCAATAACTGGTTCATTAACCAGCGAAAACGGCATTGGAATCCGCCCGAAGAAATGCGATTCGCGCTCATGGACAGTGTTGGGACCGGGACCGGGGTCGGGGTCGGGGAATACATCAAAGGTTCAAATTTTTATGACAATGGAGAAACAGGAGGCCGTGTTGTT 978 44.17 MEEFYRLNSSVISSYTNGVVASEAIASTSSGGVHGAQMMNNEMIQLEAETTTGLNMSEIIKTQIVNHPLYCKLVSAYIECQKVGAPPQVACLLEEIGRENHPPGSCIELGADPQLDNFMSYCEVLHQYKNELTKPFNEATMFLTNIELELSNLCKGSFTATSDSRPATNDEVAETLEDEPSSYREVEMPGNHEPFGTRQTNQDLKEMLLKKYSGYLSSLKKDFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSGITGLDQKQINNWFINQRKRHWNPPEEMRFALMDSVGTGTGVGVGEYIKGSNFYDNGETGGRVV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9897209 9900258 + Carg23254-RA Car12g00981 158597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00981 326 MobiDBLite consensus disorder prediction 176 198 - -
Car12g00981 326 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Car12g00981 326 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Car12g00981 326 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Car12g00981 326 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Car12g00981 326 Pfam ELK domain 203 224 IPR005539 GO:0003677
Car12g00981 326 Pfam KNOX2 domain 109 154 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00943 Car12g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00981 Car-Chr12:9897209 Car09g00271 Car-Chr9:1479832 1.37E-64 dispersed
Car12g00981 Car-Chr12:9897209 Car05g00943 Car-Chr5:9102169 2.48E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4470 PF03791 KNOX2 3.40E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00981 - - cmos:111443969 601.282