Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01004 ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGTGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCGTCGCCATCGACTAGTTCTGGCGCTGGTGGACCAGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTATGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGCGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTGATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAAATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACCGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCTACTTATTTGAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAGAATGAAGCATTCACTGCCGAAAGAGAGAAGGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTCATAGATCAGGGCACTATTATCGATAGAATAGATTATAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACGCAGAAAAAAGGCGGGATGGTAATGTGTGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA 990 44.75 MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRKFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10021081 10025940 - Carg23277-RA Car12g01004 158620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01004 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
Car12g01004 329 Pfam SNARE domain 269 321 IPR000727 -
Car12g01004 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Car12g01004 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car12g01004 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Car12g01004 329 MobiDBLite consensus disorder prediction 20 42 - -
Car12g01004 329 Coils Coil 184 204 - -
Car12g01004 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Car12g01004 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Car12g01004 329 CDD SNARE_syntaxin16 237 294 - -
Car12g01004 329 SMART tSNARE_6 228 295 IPR000727 -
Car12g01004 329 Gene3D - 79 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00958 Car12g01004 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00569 Car-Chr6:3253771 Car12g01004 Car-Chr12:10021081 2.20E-13 dispersed
Car12g01004 Car-Chr12:10021081 Car17g01008 Car-Chr17:8021846 1.16E-138 dispersed
Car12g01004 Car-Chr12:10021081 Car05g00958 Car-Chr5:9180189 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01004 K08489 - csv:101207998 562.377