Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car12g01004 | ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGTGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCGTCGCCATCGACTAGTTCTGGCGCTGGTGGACCAGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTATGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGCGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTGATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAAATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACCGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCTACTTATTTGAAGCGCCTACGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAGAATGAAGCATTCACTGCCGAAAGAGAGAAGGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTCATAGATCAGGGCACTATTATCGATAGAATAGATTATAATATTCAAAATGTTGCAACGACAGTTGACGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACGCAGAAAAAAGGCGGGATGGTAATGTGTGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA | 990 | 44.75 | MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRKFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10021081 | 10025940 | - | Carg23277-RA | Car12g01004 | 158620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car12g01004 | 329 | PANTHER | SYNTAXIN-43-LIKE | 1 | 324 | - | - | |
Car12g01004 | 329 | Pfam | SNARE domain | 269 | 321 | IPR000727 | - | |
Car12g01004 | 329 | SUPERFAMILY | t-snare proteins | 78 | 288 | IPR010989 | GO:0016020|GO:0016192 | |
Car12g01004 | 329 | ProSitePatterns | Syntaxin / epimorphin family signature. | 239 | 278 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Car12g01004 | 329 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020 | |
Car12g01004 | 329 | MobiDBLite | consensus disorder prediction | 20 | 42 | - | - | |
Car12g01004 | 329 | Coils | Coil | 184 | 204 | - | - | |
Car12g01004 | 329 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 233 | 295 | IPR000727 | - | |
Car12g01004 | 329 | PANTHER | SYNTAXIN | 1 | 324 | IPR045242 | - | |
Car12g01004 | 329 | CDD | SNARE_syntaxin16 | 237 | 294 | - | - | |
Car12g01004 | 329 | SMART | tSNARE_6 | 228 | 295 | IPR000727 | - | |
Car12g01004 | 329 | Gene3D | - | 79 | 287 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car05g00958 | Car12g01004 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00569 | Car-Chr6:3253771 | Car12g01004 | Car-Chr12:10021081 | 2.20E-13 | dispersed | |
Car12g01004 | Car-Chr12:10021081 | Car17g01008 | Car-Chr17:8021846 | 1.16E-138 | dispersed | |
Car12g01004 | Car-Chr12:10021081 | Car05g00958 | Car-Chr5:9180189 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car12g01004 | K08489 | - | csv:101207998 | 562.377 |