Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01007 ATGGGGCATTTCTCCACCATGTTCAATGGTTTAGCAAGGTCATTTTCTTTCAAAAAAGGTAGAAATTCCGGGAGTTTAGGCAACGAGGGAGGTCGAGAAGCTGCAAAAGCCATGGTAAAGGAAGCGAAAAAGAAAGACTCGATATTATGCACCTCTGGCTTCCTCAATGCAGATGGCTCGGAGAGTTTTGCTTCGGTGTTCTCGAAACGAGGCAACAAAGGAGTAAACCAAGATTGCTGCATCGTATGGCAGGAATTTGGATGCCAAGACGACATGTTATTTTGTGGAGTTTTCGATGGGCACGGACCGTGGGGTCATTTTGTCGCGAAAACGGTAAGAGAATCGATGCCACCATCGTTGCTGCACCATTGGCAACAAGGACTTGCTCAAGCTTTTCTTGAACCAGAATTGGATTCGGAAAAGAAGCATCAACGATTCGAGTTATGGAAGCATTCGTTTTTAAGAACTTGTGCTGCTATTGATCACGAGCTCGAGCAGCATCGAAAAATCGATACGGTTTACAGTGGAACAACTGCCCTGTCCATAGTTAAACAGGGTGAACTAGTCGTTTTAGCCAACGTTGGCGACTCTCGAGCGGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCGGTTCAGCTCACCGTCGATTTCAAACCGAACCTACCTCAGGAGGCCGAGCGGATTCGACAGTGCAACGGGCGGGTGTTTTGTTTAAGTGATGAGCCCGGAGTTCATCGAGTCTGGCTTCCCGACGAGGAATCGCCTGGATTGGCGATGTCGAGAGCGTTCGGTGATTATTGTATTAAAGAATTTGGGCTCATTTCAGTGCCAGAAGTGACATGTAGAAGCATAACTAGAAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTTTCTAACCAAGAAGCAGTCGAGATTGTATCGTCAACATTGGATCGAGCAAAATCATCGAAACGTTTGGTCGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCGATGGATGATATATCAGCTATCTGCCTCTTCTTCCACTCCTCATCAGATCAAGATCACCTTGTATCCTAG 1095 46.67 MGHFSTMFNGLARSFSFKKGRNSGSLGNEGGREAAKAMVKEAKKKDSILCTSGFLNADGSESFASVFSKRGNKGVNQDCCIVWQEFGCQDDMLFCGVFDGHGPWGHFVAKTVRESMPPSLLHHWQQGLAQAFLEPELDSEKKHQRFELWKHSFLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIRQCNGRVFCLSDEPGVHRVWLPDEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITRRDQFIILATDGVWDVVSNQEAVEIVSSTLDRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSDQDHLVS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10047018 10049808 - Carg23280-RA Car12g01007 158623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01007 364 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 361 - -
Car12g01007 364 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Car12g01007 364 SMART PP2C_4 52 351 IPR001932 -
Car12g01007 364 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Car12g01007 364 Gene3D - 55 356 IPR036457 -
Car12g01007 364 CDD PP2Cc 63 353 IPR001932 -
Car12g01007 364 Pfam Protein phosphatase 2C 76 327 IPR001932 -
Car12g01007 364 PANTHER ALPHABET, ISOFORM E-RELATED 1 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g01005 Car-Chr10:9726643 Car12g01007 Car-Chr12:10047018 8.00E-16 dispersed
Car12g01007 Car-Chr12:10047018 Car17g00316 Car-Chr17:1976767 1.04E-154 dispersed
Car12g01007 Car-Chr12:10047018 Car05g00962 Car-Chr5:9206584 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01007 - - csv:101208725 669.463