Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01043 ATGCAAGATATCTTTGCTTCTGTTCGCCGATCATTGGTGTTTCGTGCTCCTGTTGAGAATGAGGATTCGCATTCTCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGTATTAGGAAGTCCAGAGTGTTTTCTAGGCACTCGCCATCGTCGTCGGCTTATCCTCCGATTCTCAAGGAAACTGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTTAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGATGATTCTGTAAATATATTATTGGAATTTGTCCCTGGTGGATCAATATCATCTCTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACCAAACAGTTATTACTGGGACTGGAATACTTGCACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCGAATATTCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGTGCATCGAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCGGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCCAACTTAAGACCAGCTGCATCTGAACTCCTGAAGCATCCTTTTGTTACTGGGGAGGACCCAGAATCTCTACTTGCATCACGTGATGCATGCACGGAGCCCTTGGATACCCATTCACTTTTATATACCTCAAACCTTGAAATGAGCAAAACTCCAACGCATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAACTATACACCGCAAACAAACTAGAAAATGATACGTGGGGAACAAACAGTGATAATGAAATGTGTCAGGTTGATGACAATGATGATTTTATGTTAGATGAAGTAAAACTCAGGTCTTCTATGACATCTGGGAATTTCAAGAGTTATAACCCAATCTGTGAGCCGTCGGATGACGAGGACTGCAAATTTGATCAAAGTTCAGTAGTAAAGCAAGGAAGCGATTTAGATGAGCAAACTCTAGCACCTGGCAGCTGTTCTGAAGTTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGACGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCATTCTTGGATAAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAGGAGTTTTACAATAGTTTGAATGGATCCTGCTCTCCAGTTTTTGTAGAGAGTAAACAAGATGAAACTACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTCATCTATCCCCAGCATTCGATGCCTTCGGCACTGGGACTCCAGGGAGTGATAGCAGCAGCAGGGGTAATGCAAATGATCAGAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGCCAGAAGCTGGTAGTCCAAGCAGTAAACACTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGGAAACGAGAGATGATGCGTCAAGCTGGCACGGGAGGCAAAACATCATCTCCAAAGGATAAAGCCATCAGCAGGCCGAGAGAGCGAACACGATTTGCATCTCCATTCCGGGACGACGCGTCGGGTGCAGGGAGGGAAAACAGGAAAAATTCATCTCCCGAGGAAGTGAGGAAAGATTAG 2070 44.2 MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSAYPPILKETEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSVNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPAASELLKHPFVTGEDPESLLASRDACTEPLDTHSLLYTSNLEMSKTPTHPGSSDICNLDSLSCSKLYTANKLENDTWGTNSDNEMCQVDDNDDFMLDEVKLRSSMTSGNFKSYNPICEPSDDEDCKFDQSSVVKQGSDLDEQTLAPGSCSEVFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDKKALELKKLQSPLYEEFYNSLNGSCSPVFVESKQDETTPKYLKLPPKSRSPSRSPGHLSPAFDAFGTGTPGSDSSSRGNANDQRSQLNDWKGLLVDGQPEAGSPSSKHYSEIQRKWKEELDQELERKREMMRQAGTGGKTSSPKDKAISRPRERTRFASPFRDDASGAGRENRKNSSPEEVRKD 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10280423 10285537 - Carg17545-RA Car12g01043 158659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01043 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Car12g01043 689 MobiDBLite consensus disorder prediction 573 593 - -
Car12g01043 689 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Car12g01043 689 Coils Coil 103 130 - -
Car12g01043 689 MobiDBLite consensus disorder prediction 650 689 - -
Car12g01043 689 MobiDBLite consensus disorder prediction 615 638 - -
Car12g01043 689 Coils Coil 618 638 - -
Car12g01043 689 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01043 689 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01043 689 MobiDBLite consensus disorder prediction 538 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01043 Car-Chr12:10280423 Car07g00791 Car-Chr7:4161278 4.90E-90 dispersed
Car07g00333 Car-Chr7:1675638 Car12g01043 Car-Chr12:10280423 1.68E-17 transposed
Car17g00232 Car-Chr17:1433358 Car12g01043 Car-Chr12:10280423 0 transposed
Car12g01043 Car-Chr12:10280423 Car05g01071 Car-Chr5:10323691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89242 PF00069 Pkinase 1.80E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01043 K20606 - csv:101209358 1161.36