Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01056 ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCTTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAACAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAGTTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCATGTTCTTCATCTTCACAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCTAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGAATTCTAGAGGAGGAGTCGAGCCTCGATTAAGTGGGAGGTTGTTTGAGGGCTCCCATAGATCTCAGGGGAGGCTCTATAGTGTACTTTGTTGGAGAAGAGGATTGACTTTAGAGAAGGAGTCGAGCCTCGATGAAGAGGAAGCTGTTCGAGGGCTCCATAGGCCTCCGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGA 894 41.05 MALEAVVFSQDLYSLFAGGLSFEYPQILHDFPEKQTENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKNSRGGVEPRLSGRLFEGSHRSQGRLYSVLCWRRGLTLEKESSLDEEEAVRGLHRPPVEDDCKLSSVDEIACALHQLLSRIEEESVMN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10368142 10370408 + Carg17558-RA Car12g01056 158672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01056 297 MobiDBLite consensus disorder prediction 33 68 - -
Car12g01056 297 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
Car12g01056 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00506 Car-Chr7:2559697 Car12g01056 Car-Chr12:10368142 5.26E-61 dispersed
Car12g00206 Car-Chr12:1299052 Car12g01056 Car-Chr12:10368142 4.30E-65 dispersed
Car12g01056 Car-Chr12:10368142 Car04g00791 Car-Chr4:4568583 3.58E-47 dispersed
Car19g00187 Car-Chr19:1719740 Car12g01056 Car-Chr12:10368142 6.01E-22 dispersed
Car12g01056 Car-Chr12:10368142 Car05g01086 Car-Chr5:10408735 1.61E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4475 PF00010 HLH 4.20E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01056 - - cpep:111798037 348.977