Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01070 TTGATACCATCTTCAAGGTCCGAGCTGAGATTCTCAGACTTTCGTCTTCTTCGTTCATTCCTTGAGGTTTTAATTAGGGTTTTTCCTGTTCATCAAATCGCCTCTCAATTCCATTCAATCGCCTATTCGAAACTGCTACTGCTCTGCACATTAAACGTATTGAACAGTTGTTTTATTCTTCAACAAAGTGAAGAAGGAATGGTTGCTCAAAGGAAGGGAGCATCGCGGGTTTCCGAGGACCCCGAGGAGCTGGCTAGAGTTTCGTTGCAGGCTGTTCTTCTTGCTGATAGCTTTACCACTAAGTTTCATCCCATAACGCTTGAACGCCCAAAGGTATTATTGCCGTTGGTAAATGTCCCGATGATCAACTATACTTTATCTTGGCTCGAATCGGCTGGTGTCGAGGAGGTGTTTGTATTTTGCTGTGCTAATTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCTGTTAGTGCTGGAGATGCTTTGCGTTTGATCTATGAAAGAAATGTGATACACGGTGATTTTGTTCTTATCACTGGAGACACAATAAGCAACATGTCACTTAGGCGAGCTCTTCAAGAGCACAAGGAAAGAAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTTGGCACTGATGAGCTATTTATGGCAATTGATCCTAATACTAAGCAGCTTGTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATTATACATCTTGACAAGTCACTGCTAATGGATAATCCTTCCATGTCACTTCGTAACGATATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTCTGTTTACTGACAATTTTGATTACCAACATCTTCGTCGTCATTTTGTCAAGGGTTTGCTCTTAGACGATATCATGGGTTACAAGATTTACACACATGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAGAGGTGGACATATCCACTAGTACCAGATGTTAAATTCTTTGGGAATTCTGCTTACAAACTTGAAAGGCAGGGAATGTATAGAGCATCAGAAATATTGCAGGCACGTTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGTATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTATGTGATGGAGTTATTATAAAATCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTATTGTCGGGGATCAGTTTGTTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCGACCAATCAAGATAGCGATGAGGAGCTGGAATATGCAGACAATAGCAGTGGCATTGTAGAATTTGCAGGTACAACGGACAAGTCAAGTAGTGCACAGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGTAATGGAGGTATAGGATATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTTCCAATAAACTTGAGAAGGCTCTGCAAGCGGCAGATGATGAGTTGGAGTTGACTCAAGATTCGAATGTTCTACCAACTTCAGGGGAGTTAAAGTCCGACTCAAATTTCTCAGATGGTGATGACAATGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTCGAAGCAACGTTTCTGAGGGCTGTGCATGAAAACATTAAAGTAGACAATGTAATTTTGGAAGTGAATTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCAATATTTTATTCATTGATGAAATTTGCCTATGATTCTCCACATGGTTCATCTAGTGAATTACTGCAAAATACTACCAATATAATTACGAAATGGAAAAAGCTTTTGAAGTACTACCTTGCTGACATGGATGAAGAGATTGAAGTGATATTAAAATTCGAAGAGATGTGCTTGGAATCTGCCAAGGAATTTACTCCACATTTTACCAAGATCTTATGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTGAGGTGGGACGATGAGAAAAAAGAAGCAGATGATTCGGATAAACTCTTCGTCAAGCAGGCAGAGAAATTCATTGAATGGTTAAGAGTTGCATCAGAAGAGGAAGAAGAGGAAGAATAG 2382 40.3 LIPSSRSELRFSDFRLLRSFLEVLIRVFPVHQIASQFHSIAYSKLLLLCTLNVLNSCFILQQSEEGMVAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFHPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSVSAGDALRLIYERNVIHGDFVLITGDTISNMSLRRALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDPNTKQLVYYEDKADNSKGIIHLDKSLLMDNPSMSLRNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKVIVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEFAGTTDKSSSAQSKSLEMQGWPASELGNGGIGYVWSICEGSVEEEWRHSVAPIPSNKLEKALQAADDELELTQDSNVLPTSGELKSDSNFSDGDDNEDSRDDSIHFEKEVEATFLRAVHENIKVDNVILEVNSLRLSYNKVAADCAGAIFYSLMKFAYDSPHGSSSELLQNTTNIITKWKKLLKYYLADMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEEEEE 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10476722 10487979 + Carg17572-RA Car12g01070 158686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01070 793 MobiDBLite consensus disorder prediction 593 608 - -
Car12g01070 793 Coils Coil 576 596 - -
Car12g01070 793 ProSiteProfiles W2 domain profile. 621 792 IPR003307 GO:0005515
Car12g01070 793 MobiDBLite consensus disorder prediction 593 622 - -
Car12g01070 793 Pfam eIF4-gamma/eIF5/eIF2-epsilon 713 792 IPR003307 GO:0005515
Car12g01070 793 Pfam Nucleotidyl transferase 91 234 IPR005835 GO:0009058|GO:0016779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00677 Car-Chr11:3785856 Car12g01070 Car-Chr12:10476722 1.15E-13 dispersed
Car12g01070 Car-Chr12:10476722 Car15g00118 Car-Chr15:670542 2.41E-08 dispersed
Car12g01070 Car-Chr12:10476722 Car05g01106 Car-Chr5:10621646 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01070 K03240 - csv:101217025 1295.41