Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01072 ATGAGTAAATTCCAAAAAACTGCCAATTTCATTACAATCAGTACACTTAACTCTTACCCGGACACTTGCTCTCTGTTCATTCACCAACGACCTCGCATTTCACCGGAGGAGGAGGAGGAGGAGGAGATACGGAGGGGCGGTGGGTTTGAATCGTTGAGGACTTGTGGAAGATCTGTTTCTACTGATTTCACGAGCTTTTTCTCAGTTTATATTCCCGACACAGTTCGTTTCATCTCGAAAAAGATATCAGGTTTAGAAGGGGGATTTGTTGTTTGCTATGGAGAAGAGAAATGGAGCTTGATTTTGAGCAATGGGATCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCGAGGATAAGAAGGAGAAGAGCTCTGAATTTGGTGATGATTTGGAAAGGAAGGAAGCTGATGCGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCTCAGCCTTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTCTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACCTTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGACACGTTGACCGGTAAAGTTGTTGCACTGAAGAAGGTCCGATTTGACAATTTAGAGCCAGAGAGTGTAAGATTTATGGCTAGAGAGATTCTCATTTTGCGGCGCCTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTCAAGTGTTTCATGAAACAACTGCTATCAGGACTCGAGCATTGTCACAACCACAGGGTGCTTCATCGTGATATTAAGGGTTCGAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCGGACTTTGGACTAGCTACTTTCTTTGATCCAAAACTCAAGCACCCTTTGACTAATCGTGTTGTTACATTATGGTATCGATCTCCGGAGCTTCTACTAGGTGCAACTCATTATGGTGTAGGCATAGACCTTTGGAGTGCAGGTTGTATTTTGGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGTACAGAGGTTGAACAACTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAGTATTTGAAGAGAGCGAAGTTGCCCAATGCAGCCTTATTTAGGCCGAGAGAACCTTATAAGAGATGTATAAGAGAGACCTTTAAAGATTTCCCACCATCATCATTTTCTCTTATAGATACACTTCTTGCAATTGATCCCGCTGAGAGGACGACAGCTAGAGATGCATTGAAAAGCGAGTTTTTCGTTACAGAACCTTATGCATGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAAAGACGGGATGATGAAGCGCGAAGACAAAGAGCAGCAAGTAAACTGCAGAACGATCATGTGAAGAAGACACGCCCACGTAACCGTGCTGGTAGGGCCATTCCTATTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGACAGACGACGTTTAATTACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATACTCACGTCATATTGATCCAGCTGCTGTTCCTTCTGATGTTGCATTCAGTTCAACATCATTCGGCTATCCAAACAAGTTCGACGAAACCTGGTCCGGACCATTGGTCGAGTCTTCCGACATCGGTGCTCAAAGGCAGAAGTATCCGGGAGGCGATGCAAAAGAACGACAATCAACCCAATCTTCAGTTAAAGGGAAAAAGGTAGCATGA 1995 44.91 MSKFQKTANFITISTLNSYPDTCSLFIHQRPRISPEEEEEEEIRRGGGFESLRTCGRSVSTDFTSFFSVYIPDTVRFISKKISGLEGGFVVCYGEEKWSLILSNGIREVASRNLADSEDKKEKSSEFGDDLERKEADAAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMKQLLSGLEHCHNHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKLKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIRETFKDFPPSSFSLIDTLLAIDPAERTTARDALKSEFFVTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDHVKKTRPRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAAVPSDVAFSSTSFGYPNKFDETWSGPLVESSDIGAQRQKYPGGDAKERQSTQSSVKGKKVA 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10502659 10508778 - Carg17574-RA Car12g01072 158688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01072 664 MobiDBLite consensus disorder prediction 648 664 - -
Car12g01072 664 ProSiteProfiles Protein kinase domain profile. 209 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01072 664 MobiDBLite consensus disorder prediction 167 181 - -
Car12g01072 664 MobiDBLite consensus disorder prediction 144 181 - -
Car12g01072 664 MobiDBLite consensus disorder prediction 573 593 - -
Car12g01072 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Car12g01072 664 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524
Car12g01072 664 Pfam Protein kinase domain 209 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01072 664 MobiDBLite consensus disorder prediction 511 540 - -
Car12g01072 664 MobiDBLite consensus disorder prediction 152 166 - -
Car12g01072 664 MobiDBLite consensus disorder prediction 622 664 - -
Car12g01072 664 MobiDBLite consensus disorder prediction 503 551 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00947 Car12g01072 CCT
Car10g00947 Car12g01072 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00759 Car-Chr7:3937572 Car12g01072 Car-Chr12:10502659 2.34E-147 dispersed
Car11g01052 Car-Chr11:8060519 Car12g01072 Car-Chr12:10502659 0 dispersed
Car12g01072 Car-Chr12:10502659 Car16g00361 Car-Chr16:2244419 0 dispersed
Car20g00175 Car-Chr20:952919 Car12g01072 Car-Chr12:10502659 1.24E-25 dispersed
Car12g01072 Car-Chr12:10502659 Car14g01474 Car-Chr14:12256152 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89245 PF00069 Pkinase 5.70E-68 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01072 K08819 - csv:101217497 1031.17