Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car12g01072 | ATGAGTAAATTCCAAAAAACTGCCAATTTCATTACAATCAGTACACTTAACTCTTACCCGGACACTTGCTCTCTGTTCATTCACCAACGACCTCGCATTTCACCGGAGGAGGAGGAGGAGGAGGAGATACGGAGGGGCGGTGGGTTTGAATCGTTGAGGACTTGTGGAAGATCTGTTTCTACTGATTTCACGAGCTTTTTCTCAGTTTATATTCCCGACACAGTTCGTTTCATCTCGAAAAAGATATCAGGTTTAGAAGGGGGATTTGTTGTTTGCTATGGAGAAGAGAAATGGAGCTTGATTTTGAGCAATGGGATCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCGAGGATAAGAAGGAGAAGAGCTCTGAATTTGGTGATGATTTGGAAAGGAAGGAAGCTGATGCGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCTCAGCCTTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGACTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTCTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACCTTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGACACGTTGACCGGTAAAGTTGTTGCACTGAAGAAGGTCCGATTTGACAATTTAGAGCCAGAGAGTGTAAGATTTATGGCTAGAGAGATTCTCATTTTGCGGCGCCTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTATATGGAGCATGATTTAGCTGGACTTGCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTCAAGTGTTTCATGAAACAACTGCTATCAGGACTCGAGCATTGTCACAACCACAGGGTGCTTCATCGTGATATTAAGGGTTCGAATCTTCTTATTGATGGTGAAGGGATGCTTAAGATTGCGGACTTTGGACTAGCTACTTTCTTTGATCCAAAACTCAAGCACCCTTTGACTAATCGTGTTGTTACATTATGGTATCGATCTCCGGAGCTTCTACTAGGTGCAACTCATTATGGTGTAGGCATAGACCTTTGGAGTGCAGGTTGTATTTTGGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGTACAGAGGTTGAACAACTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAGTATTTGAAGAGAGCGAAGTTGCCCAATGCAGCCTTATTTAGGCCGAGAGAACCTTATAAGAGATGTATAAGAGAGACCTTTAAAGATTTCCCACCATCATCATTTTCTCTTATAGATACACTTCTTGCAATTGATCCCGCTGAGAGGACGACAGCTAGAGATGCATTGAAAAGCGAGTTTTTCGTTACAGAACCTTATGCATGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAAAGACGGGATGATGAAGCGCGAAGACAAAGAGCAGCAAGTAAACTGCAGAACGATCATGTGAAGAAGACACGCCCACGTAACCGTGCTGGTAGGGCCATTCCTATTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGACAGACGACGTTTAATTACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAGGACGGGGCACTCGGATTCACATTGGGATACTCACGTCATATTGATCCAGCTGCTGTTCCTTCTGATGTTGCATTCAGTTCAACATCATTCGGCTATCCAAACAAGTTCGACGAAACCTGGTCCGGACCATTGGTCGAGTCTTCCGACATCGGTGCTCAAAGGCAGAAGTATCCGGGAGGCGATGCAAAAGAACGACAATCAACCCAATCTTCAGTTAAAGGGAAAAAGGTAGCATGA | 1995 | 44.91 | MSKFQKTANFITISTLNSYPDTCSLFIHQRPRISPEEEEEEEIRRGGGFESLRTCGRSVSTDFTSFFSVYIPDTVRFISKKISGLEGGFVVCYGEEKWSLILSNGIREVASRNLADSEDKKEKSSEFGDDLERKEADAAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMKQLLSGLEHCHNHRVLHRDIKGSNLLIDGEGMLKIADFGLATFFDPKLKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIRETFKDFPPSSFSLIDTLLAIDPAERTTARDALKSEFFVTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDHVKKTRPRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAAVPSDVAFSSTSFGYPNKFDETWSGPLVESSDIGAQRQKYPGGDAKERQSTQSSVKGKKVA | 664 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10502659 | 10508778 | - | Carg17574-RA | Car12g01072 | 158688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 648 | 664 | - | - | |
Car12g01072 | 664 | ProSiteProfiles | Protein kinase domain profile. | 209 | 493 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 167 | 181 | - | - | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 144 | 181 | - | - | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 573 | 593 | - | - | |
Car12g01072 | 664 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 329 | 341 | IPR008271 | GO:0004672|GO:0006468 | |
Car12g01072 | 664 | ProSitePatterns | Protein kinases ATP-binding region signature. | 215 | 238 | IPR017441 | GO:0005524 | |
Car12g01072 | 664 | Pfam | Protein kinase domain | 209 | 493 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 511 | 540 | - | - | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 152 | 166 | - | - | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 622 | 664 | - | - | |
Car12g01072 | 664 | MobiDBLite | consensus disorder prediction | 503 | 551 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car10g00947 | Car12g01072 | CCT | |
Car10g00947 | Car12g01072 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car07g00759 | Car-Chr7:3937572 | Car12g01072 | Car-Chr12:10502659 | 2.34E-147 | dispersed | |
Car11g01052 | Car-Chr11:8060519 | Car12g01072 | Car-Chr12:10502659 | 0 | dispersed | |
Car12g01072 | Car-Chr12:10502659 | Car16g00361 | Car-Chr16:2244419 | 0 | dispersed | |
Car20g00175 | Car-Chr20:952919 | Car12g01072 | Car-Chr12:10502659 | 1.24E-25 | dispersed | |
Car12g01072 | Car-Chr12:10502659 | Car14g01474 | Car-Chr14:12256152 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89245 | PF00069 | Pkinase | 5.70E-68 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car12g01072 | K08819 | - | csv:101217497 | 1031.17 |