Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01079 ATGGATGGTTTCTCAGATCTTGAGCCCGATTGCTCTGAATTCGTTGAAATTGATCCCACTGGCCGATATGGCAGATATAATGAAATTTTAGGAAAAGGGGCTTCAAAAACAGTTTACAGAGCTTTTGATGAGTATAATGGAATTGAAGTAGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAACGACTTTACTGTGAGATTCATCTCTTGAAGACATTGAAACATAGAAATATCATGAAATTCTACACTTCTTGGGTTGATATTGCTAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGATTGAAGCATAAACGAGTTAATATTAGAGCTGTGAAGCATTGGTGTAGGCAGATTTTGAAGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTATCATCCATAGAGATCTCAAGTGTGATAATATCTTTGTTAATGGTAATCAAGGGGAGGTTAAGATTGGTGATCTTGGACTTGCTGCTATTCTTAGGAAATCTCATGCTGATCATTGTGTAGAAGCATATAACGAATTAGTCGATATTTACTCATTCGGGATGTGCGTTCTCGAGATGATAACGTTCGAATATCCATACAGCGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTCATATCCGGGAAAAAACCAGGTGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGACAGTTCATCGATAAGTGTTTAGCATCGGTTTCATTTCGACTCTCGGCAGCAGAGCTTTTGAATGATCCTTTTCTTCAAGTTGATAATGGCGAATATGATCTTAGACCTGTCGACTACGGGAGAGGATTCGACGATGTATGCTCTCTTATAAGACGTGACAGCTCCTTTTGTAACGGATATCCATATGATTATAGTTTTGAAGCTTCGAGTGAATCGGGTTACCATCCGATTGATCACGAAACCAATGGAATCGAGCTTTTCGAGTATTATGAAGGTGAACATTCTGAAGATGGCAAGATGAGAGAAGATGGTAGCATCTTCTTAAGACTCAGAATTACTGATAAAGAAGGACTTATTAGGAACATTTACTTTCCGTTCGATGTCGAGACGGATACAGCATTAAGCGTTGCAACAGAAATGGTAGCGGAGCTAGATATTACAGATCAAGACGTGACGAGAATTGCTGATATGATCGACGGAGAAATCGCTTCCTTGGTACCCGAATGGAGACCAGGTCCGGGAATTGAGGAAACGCCTCGTTTTGCTTGTCATAATTGTGCTACTACTTCTTACAACAATGCTTCATCAAATGGTCTTTCATTGAGGAATCCTGGCGGAAAAAACTCGGACGTAGCTCAATGTTGTGGACATCGATATGCTTCGATACACGGTCGTTTCGAGGAGATAATGTATCAAGCTGACGAATCCGAGCATCATCCAGTAGAGGGTGCACCAAATATATCAAGCTTGAATTATCCTGAAATATGGGGTCGTCACGAAAGCCGTGAACTTAGCTCAATGAGCTCACGACATAGCCACTCGGATGAAGATTACGAGAAATCAGATCGACCAAGTACAGTCATGGATGCTAAAGAAACGATTGTGGAAAGTAAAACCGCTCCTAATACGAGAACGTCGCTTAGGGACCTGATGAATTCCCTTTCTTTCTCGGAAACGCCTTCGTTATATGAACCTCGAGATATTGACGAAAATGATGCCCAGCAAGAACTGAGATGGATTAAGGCAAAGTACCAAATGGAAATAAACAAGCTCAAAGAACAAAAAATGGAGAATGGGACACTGGTAGGCCACGACCAAACCCTCGACAGGTCCGATCAAGATACGAACCGAAATAGTACCGAGAGCCGTGTTTATATCAGTAATAGCTGTTACGGTTCAGACGCTCGGAAGGTCGTGGAATCGCCTGTCGTGGAGAAGGTTGTCACGGCTAAAAATGCCTGTAATGGTTCATTGCTTCCAAGCTCTCTTCATAGAGCAATCTCTCTACCAGTTGATGCTGTTCATATGTAA 2043 41.51 MDGFSDLEPDCSEFVEIDPTGRYGRYNEILGKGASKTVYRAFDEYNGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLHYLHSHEPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVEAYNELVDIYSFGMCVLEMITFEYPYSECTHPAQIYKKVISGKKPGALYKVKDPEVRQFIDKCLASVSFRLSAAELLNDPFLQVDNGEYDLRPVDYGRGFDDVCSLIRRDSSFCNGYPYDYSFEASSESGYHPIDHETNGIELFEYYEGEHSEDGKMREDGSIFLRLRITDKEGLIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFACHNCATTSYNNASSNGLSLRNPGGKNSDVAQCCGHRYASIHGRFEEIMYQADESEHHPVEGAPNISSLNYPEIWGRHESRELSSMSSRHSHSDEDYEKSDRPSTVMDAKETIVESKTAPNTRTSLRDLMNSLSFSETPSLYEPRDIDENDAQQELRWIKAKYQMEINKLKEQKMENGTLVGHDQTLDRSDQDTNRNSTESRVYISNSCYGSDARKVVESPVVEKVVTAKNACNGSLLPSSLHRAISLPVDAVHM 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10561342 10565400 - Carg17582-RA Car12g01079 158695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01079 680 Pfam Protein kinase domain 27 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01079 680 Coils Coil 578 598 - -
Car12g01079 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Car12g01079 680 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 351 405 IPR024678 GO:0004674|GO:0005524
Car12g01079 680 ProSiteProfiles Protein kinase domain profile. 24 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01079 680 MobiDBLite consensus disorder prediction 507 547 - -
Car12g01079 680 MobiDBLite consensus disorder prediction 507 533 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01115 Car12g01079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01027 Car-Chr8:7007254 Car12g01079 Car-Chr12:10561342 0 dispersed
Car12g01079 Car-Chr12:10561342 Car17g00216 Car-Chr17:1308498 0 dispersed
Car11g00846 Car-Chr11:5156074 Car12g01079 Car-Chr12:10561342 0 transposed
Car12g01079 Car-Chr12:10561342 Car05g01115 Car-Chr5:10707838 7.61E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89246 PF00069 Pkinase 5.00E-38 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01079 K08867 - csv:101219552 1134.78