Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01090 ATGGCGTTGAGGTGCAGGAAAAGTGATGAGGTAGTTGAAGTTCTTAATCGTGAAGAACATCTGGTTATGGCTAAAACTCACAAACGGAGGTGGAAGATGGCCTTTGCCGCCATTTATTTCACTAGAGCTCTCATCTCTCTGACGAGGAAGGTCACTGGCAGTAAATCCGGCGCTCTTTTGCGGTCGCTTTCGTTTGTTACTCTTGATGTGCAGGTTAATGATGATAGTACGGATTCTGGCGAGCAGCCGTGCATGGCAGGCTTTTTCGGCGTTGATCAGAAAGTTCTTAGTGAGATGGTGAGGGAGAAGGACTGTGAGTGTTTGAATCGATTTGGAGGCGTTGATGGACTGGCCAATCTTCTTAAAACTAATCCACATGACGGAATTTGTGCAACTGAGGATGATCTTAATTACAGAACAAACGCTTTTGGAACAAATACTTACTCGAAGCTGCTTTCTTTGGGATTTGGTATCAAACAACACGGTTGGGATGATGGATGGTACGACGGTGGCAGCATTGTCATCGCCATAGTTCTGGTGGTCGTCGTTTCCGCCGCGAGCAACTTCAAGCAATCGCGACAGTTCGAGAAGCTTTCAAACGAGAGAGACGACATAAAAATCGAGGTCACCAGAGCCGGTCGACGCAAATCAGTATCGATATTTGAACTCCTTGTCGGAGACATCGTGAATTTGAAGATCGGAGATCAGATTCCCGCGGACGGAGTGTTCCTCGATGGACATTCGCTGAAGATCGACGAATCGAGCATGACTGGAGAGAGCGAACACGCTGAAGTAAATCACGAAATTAATCCGTTTCTGCTATCAGGAACCAAAGTGAACGATGGATTTGGTGTGATGATGGTGACTTCTGTGGGAATGAACACAGCCTGGGGAGAAATGATGAGTTCAATTAGAAGGGAAATTAATGAGGAAACTCCACTGCAAGCTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGACTGACGGTCGCAGTGGTGGTGCTTCTTGTTCTTCTGGCTCGCTATTTCACTGGTAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCGATGATGTTATGAATGCAGTTCTTGGCATGGTTGCGGCGGCTGTTACGATCGTTGTGGTGGCGATTCCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCGGATAATGCAATGGTTCGGAAACTCTCTGCTTGTGAGACCATGGGCTCAGCAACCACAATTTGTACTGATAAAACTGGTACCCTTACTTTGAATCAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATAAAATTATGAACACAGATTATTCCAATTCAAGGATTAGCAGTAAGGTTGTTGAATTACTGCACCAAGCAGTTGGATTGAACACAACTGGTAGTATTCAAACACCAGCTTCTTCATTGCCTCTAGAAATCTTCGGGAGTCCGACCGAGAAAGCGATACTTTCGTGGGCGGTATTCGACCTGGATTTGAACTTGGATGAACTGAAGAAACAACATGAGATGATCCTGGTAGAGACTTTCAGTTCAGAGAAGAAGAGAAGTGGAGTTTTGACACGACGACACGGGACGAGGCTTGTTAATACACACTGGAAAGGAGCAGCAGAGATGATATTGGCTATGTGTTCATATTACTATGAGAAACAAGGAACAGCTAGAGCCATTGATGGTGAAATGAGAAGACAATTGACTGAAATAATCACAGCCATGGCAGAAAAAAGGCTCCGATGCATAGCCTTTGCTCACAAGTCGAATGAAGACGACGATATCCAAGACATTCCTGTGAAACTCGACGAATCGGAGTTGACATTACTGGGAATAGTTGGTTTGAAAGATCCTTGCAGGCCAGGAGTTAGAGAAGCTGTGGAATCATGTAGAGCTGCTGGAGTGAGTATCAAAATGGTGACAGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGTGGAATACTAAATCCCGACGACGACGCTACTAACAGCGAAGTAATTGTCGAGGGCGTAAAATTTAGAAACTACACACCTGAGGAGAGGCTCGAAAAGATTGGGACCATCCGAGTGATGGCTAGATCTTCCCCATTTGACAAGCTTCTAATGGTACAATGCTTGAAGAATCAAGGCCATGTAGTGGCAGTCACCGGGGATGGAACAAATGACGCCCCAGCTCTTCACGAGGCTGACATTGGCCTTTCCATGGGAATTCAAGGAACAGAAGTGGCAAAGGAGAGCTCCGACATCGTCATCTTAGACGATAACTTTACGTCGGTCGTCACCGTCTTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAGCTCACTGTGAACATTGCAGCATTAGTCATCAATTTCATCGCCGCTGTCTCGTCCGGTAAAGTCCCGCTAACAGCGGTACAGCTACTATGGGTGAATCTCATCATGGACACCATGGGAGCTTTAGCCTTAGCTACTGAGCTACCCACCAATGATCTCATGACGAAAACGCCGGTCGGTCGATCCGATCCATTAGTAACGAAGATCATGTGGAGGAATCTCATAACTCAGGCTGTGTATCAAGTGGCAGTCTTGCTGGTTTTGGAATTTAAAGGAAGTTCCATCTTCAATGTCAATGAGAAGGTTAAGAGCACACTGATCTTCAACACTTTTGTTCTATGCCAAATCTTCAACGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATATTTGAAGGGCTACACAAAAGCAAGCTGTTTTTGGCAATAATTGTGATAACCTTAGCTTTCCAAGTGGTAATGGTTGAGGTTTTGGGAAGGTTTGCCAATACATCGAGGTTGAATTGGGGCCAGTGGGGGGCATGTCTTGGCATAGCAGCTTTGTCTTGGCCAATTGGATGGCTCTCCAAGTTGATACCAGTTTCAGCCCTGCAGTTTCCATGGGGAAGAAACTCAGGACAATAA 3003 45.42 MALRCRKSDEVVEVLNREEHLVMAKTHKRRWKMAFAAIYFTRALISLTRKVTGSKSGALLRSLSFVTLDVQVNDDSTDSGEQPCMAGFFGVDQKVLSEMVREKDCECLNRFGGVDGLANLLKTNPHDGICATEDDLNYRTNAFGTNTYSKLLSLGFGIKQHGWDDGWYDGGSIVIAIVLVVVVSAASNFKQSRQFEKLSNERDDIKIEVTRAGRRKSVSIFELLVGDIVNLKIGDQIPADGVFLDGHSLKIDESSMTGESEHAEVNHEINPFLLSGTKVNDGFGVMMVTSVGMNTAWGEMMSSIRREINEETPLQARLNKMTAIIGKLGLTVAVVVLLVLLARYFTGSTGEFNGSKTRFDDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTEFWIGEDKIMNTDYSNSRISSKVVELLHQAVGLNTTGSIQTPASSLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEMILVETFSSEKKRSGVLTRRHGTRLVNTHWKGAAEMILAMCSYYYEKQGTARAIDGEMRRQLTEIITAMAEKRLRCIAFAHKSNEDDDIQDIPVKLDESELTLLGIVGLKDPCRPGVREAVESCRAAGVSIKMVTGDNLHTATAIAIECGILNPDDDATNSEVIVEGVKFRNYTPEERLEKIGTIRVMARSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNIAALVINFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMTKTPVGRSDPLVTKIMWRNLITQAVYQVAVLLVLEFKGSSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNIFEGLHKSKLFLAIIVITLAFQVVMVEVLGRFANTSRLNWGQWGACLGIAALSWPIGWLSKLIPVSALQFPWGRNSGQ 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10654522 10657603 - Carg17593-RA Car12g01090 158706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01090 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Car12g01090 1000 Pfam Cation transporting ATPase, C-terminus 815 985 IPR006068 -
Car12g01090 1000 Pfam haloacid dehalogenase-like hydrolase 420 744 - -
Car12g01090 1000 Pfam E1-E2 ATPase 206 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00287 Car-Chr8:1816955 Car12g01090 Car-Chr12:10654522 0 dispersed
Car12g01090 Car-Chr12:10654522 Car19g00672 Car-Chr19:7945807 1.61E-106 dispersed
Car12g01090 Car-Chr12:10654522 Car12g00873 Car-Chr12:8608357 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01090 K01537 - csv:101218531 1532.31