Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01100 ATGAATGCCAATACCCATGTGATGTTTTCTCTTTTCTTCCTCTTCCTTGCCCTCTTCACCCCTGTTTATTCCTCTCCTCTTCTTGCTTCCGATCCGCCTTTGTTGTTGCGCTGTGGTTCAAATGAAGAATCTACCGATGATATTGGCCGAAAATGGACTCCCGATTCCAAATTCCTCCCCTCCAAGAATACCCAAACGGCGTCGGCGGGGTTTCAAGATCCGTCCATGACATCGCAGGTTCCATATATGGATGCTAGGATCTTCACTTCTGCGACGGCGTATAAATTTCCGATCAAACCTGGTAATCGCTATTGGCTTCGACTTCATTTCTATCCTTCCACTTATGGCGTTCATGATTCTGCGAATTCCTTTTTCACCATCGCCGCGAATGATTTGTCCCTTGCGAAGAATTTTAGTGTTCATCTCACCTGTCAGGCCTTAACTCAGGCCTACATTATCCGCGAATTTACTCTCGCGGCTTCCGCATCTGAAACCCTAAATTTGACCTTCACCCCTGTTACTGGATTTGCTTTTGTGAATGGGATTGAATTGGTTCAAATGCCGGAGATCTTTGGGGAAGCAGTGATGATTGGTGGAGGGCGGCAAACTACGGACGTTACGAAGATGAGTATGCAGACAATAACGAGATTGAACGTCGGTGGGAGCTACATTTCTCCGGTGAACGACTCGGGTTTGACAAGAACATGGTATGATGATTTTCCTTATCTTTATGGTGCTGCAGAGGGTGTGGCGGTAGAAGCTGCGAAGAGGCTGGTGATTAACTATAAAGATATGCCGAGTTATATAGCACCTGAGGAAGTTTACAGGTCGTTGAGATCAATGGGGACAGAAGCGAGTGTGAATGGGAATTACAATTTGACATGGCTGTTTCCTAATATTGATCCAGGATTCATGTATCTAATGAGATTGCATTTCTGTGATCTGACATTGAGTAGGGCAAATCAGGTGGTGTTTGATGTGTTCATCAACAACCAAACGGCGGACACGAGGGGGATTGATGTGATAGCTTGGTCGGGGGGGCGGGGGGTGCCAAAATACAGGGATTATGTAGTGTTTTCGCCAGAAGCAGCAACATTGCAGGAGATATGGCTGGCATTGCATCCGAAGTATTCGGAGTCGCCGGAGTTTGCGGATGCAATGTTGAATGGGCTAGAGATATTCAAGCTGGAATCTGGGAAGAACTTGGCAGGGATGAATCCTCAAACGTCGGCATTTAGGATGAAGCTTGAGGGGCAAGGAGACAGAAAGTTTGAAGCAAAGAGCAACAATGTTGAAGTGATTGGAGGGGCTGCAGGGGGGGCTGCAGCATTTGTTGTGGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAACAGAATGCCAGGGAGTGATTCACATACAGCTAGCTGGTTACCGATCTATGGGAATTCGCATTCGAGTGGGAGCAAATCAACCGTGTCTGGGAAGAGTATGGCGAGTAATTTGGCACAAGGTTTGGCGCGGCATTTTTCGCTTGCAGAGATTTTAAATGCTACGAAAAACTTTAGTGAGTCTAACGTGATTGGGGTTGGAGGATTTGGGAAGGTGTATAAGGGAGTGATCGATGGAGGAACGAAAGTTGCTATTAAAAGGTCGAACCCGCAGTCGGAACAAGGAGTTCACGAATTCCTTACAGAAATAGATTTGCTTTCGAAGCTGAGACACAAACATTTGGTCTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTGATTTATGATTACATGGGTTTGGGAACTCTGAGGGAGCATCTGTATAAGACCAATAATAATAAAACTCGTCTCTCATGGAAGAAAAGGCTGGAGATTTGCATTGGAGCAGCTAGAGGACTTCACTACCTTCACACGGGAGCACAGTACACCATCATTCATAGAGATGTCAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGCCTCTCGAAAACGGGTCCGAACATGGCTAACGGTGGTCATGTTAGCACCGTCGTTAAGGGTAGCTTTGGCTACTTAGATCCAGAGTACTTCAGAAGGCAACAACTCACTGAAAAATCTGATGTCTATTCTTTTGGAGTTGTTCTGTTTGAAGTGTTGTGTGCAAGGCCTGCTTTAAACCCAAGCCTCCCCAAGGAACAGGTTAGTCTTGCGGATTGGGCGTTGCACTGCAAACGCAAAGGAGTTCTTGACGATCTCATTGATCCCTACCTCAAAGGCAAAATCACCCCTGATAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTCGACGACCATGGAGCCGAGCGTCCTTCTATGGGTGATGTCTTGTGGAACCTTGAATTTGCTCTCCAACTACAAGAAAGTGCCGATGGTGGTGGCTCGAGTCACAAATCGAGAATAAACAGCAGCAGCAGCAACAACAACAACGACGACATAGATAACCACAGAAACCAAGACATGACTGCTCATTACAACAACCTCAGCCTTGGAAGTGAACAAGATTTACTTCAACAAACTGATGAACAAGAGAGTACTGAAATCTTCTCCCAACTTGTCCATCCCTCAGGTCGGTAA 2601 45.94 MNANTHVMFSLFFLFLALFTPVYSSPLLASDPPLLLRCGSNEESTDDIGRKWTPDSKFLPSKNTQTASAGFQDPSMTSQVPYMDARIFTSATAYKFPIKPGNRYWLRLHFYPSTYGVHDSANSFFTIAANDLSLAKNFSVHLTCQALTQAYIIREFTLAASASETLNLTFTPVTGFAFVNGIELVQMPEIFGEAVMIGGGRQTTDVTKMSMQTITRLNVGGSYISPVNDSGLTRTWYDDFPYLYGAAEGVAVEAAKRLVINYKDMPSYIAPEEVYRSLRSMGTEASVNGNYNLTWLFPNIDPGFMYLMRLHFCDLTLSRANQVVFDVFINNQTADTRGIDVIAWSGGRGVPKYRDYVVFSPEAATLQEIWLALHPKYSESPEFADAMLNGLEIFKLESGKNLAGMNPQTSAFRMKLEGQGDRKFEAKSNNVEVIGGAAGGAAAFVVVALCFAVYQRKNRMPGSDSHTASWLPIYGNSHSSGSKSTVSGKSMASNLAQGLARHFSLAEILNATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPQSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNNKTRLSWKKRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPYLKGKITPDSLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSHKSRINSSSSNNNNDDIDNHRNQDMTAHYNNLSLGSEQDLLQQTDEQESTEIFSQLVHPSGR 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10723567 10726167 + Carg17603-RA Car12g01100 158716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01100 866 MobiDBLite consensus disorder prediction 797 826 - -
Car12g01100 866 Pfam Malectin-like domain 38 395 IPR024788 -
Car12g01100 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Car12g01100 866 MobiDBLite consensus disorder prediction 846 866 - -
Car12g01100 866 ProSiteProfiles Protein kinase domain profile. 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01100 866 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Car12g01100 866 MobiDBLite consensus disorder prediction 797 820 - -
Car12g01100 866 Pfam Protein tyrosine and serine/threonine kinase 518 734 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00249 Car-Chr3:3698283 Car12g01100 Car-Chr12:10723567 0 dispersed
Car07g01172 Car-Chr7:7090046 Car12g01100 Car-Chr12:10723567 0 dispersed
Car12g01100 Car-Chr12:10723567 Car01g01013 Car-Chr1:9662947 0 dispersed
Car12g01100 Car-Chr12:10723567 Car05g01140 Car-Chr5:10873406 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89248 PF12819 Malectin_like 2.70E-36 CL0202 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01100 - - cmax:111465432 1607.42