Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01112 ATGGGTACACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGATTGGTATCCAAGATTACAGGGCAGGAAGCCGAGATCGAAGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAGGCTCCCGCTGGTGGTGTCGATGATATGACGAAGTTATCTTACCTGCACGAGCCGGGAGTTCTACAAAATTTAAAAAGTCGATATGAACTCAACGAAATCTATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGGGCACCATTTGGAGAGCTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCTTACAGTCGCTTTGGTAAGTTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCAGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCTGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAGTACAAGCTGGGAAATCCCAAATCATTTCATTATCTTAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCCAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCAATTCTTCATCTCGGTAACATTGAATTTACGAAGGGCAAAGATGGTGACTCATCAGTTCCAAAAGACGACAAAGCGAAGTTTCATCTTAAAATGACTTCAGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATTACCCCTGAAGAAGTGATCAAACGTAGCTTGGATCCTCAAAGTGCGGCTATTAGTCGGGATGGTTTGGCCAAAACGATATATTCTCGGCTATTCGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCTTGATCGGTGTCCTTGATATCTATGGTTTCGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATCGATTGGAGTTATATCGAGTTCGTTGACAACCAAGATGTGTTAGATCTCATTGAAAAGAAACCTGGTGGAATAGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCGACACACGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTCATAAAGCCAAAGCTTTCTCGAACGGATTTTACCATCGCTCATTATGCTGGAGAGGTTTTATATCAATCTGACCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAATATCAGGATTTGTTGAGTGCCTCCAAATGTTCATTTGTTGCTGGCCTTTTTCCTCCACTAAAAGAAGAATCTGCAAAATCTTCTAAATTTTCTTCAATCGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACATTAAATTCCACAGAGCCTCACTACATCAGATGTGTAAAGCCAAACAACCTCTTAAAACCTGCCATTTTCGAGAATGTTAACATAATGCAACAACTGCGGTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAGTTCATTAATCGATTCGGAATTTTAGCTGAAGAATCTTTGGAAGGAAACTATGATGAAAAAAGTGTCTGCAAAAAGATACTAGAAAAGCAGGGACTTAAAGGGTTTCAGATTGGTAAGACAAAAGTATTCCTTAGAGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTGAGGTGCTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATCGCTCGCAAACAGTTTATTGCATTACGAAAGGCGACCATACATGTGCAATCTAGGTGGAGAGGCTCGATGGCGTTGCCATAA 2115 40.57 MGTPVNIIVGSHVWIEDPEVAWLDGLVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKDGDSSVPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEYQDLLSASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAEESLEGNYDEKSVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGSMALP 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10831623 10838761 - Carg17434-RA Car12g01112 158728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01112 704 ProSiteProfiles Myosin motor domain profile. 62 660 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car12g01112 704 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car12g01112 704 Pfam IQ calmodulin-binding motif 665 683 IPR000048 GO:0005515
Car12g01112 704 Pfam Myosin head (motor domain) 64 140 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car12g01112 704 Pfam Myosin head (motor domain) 141 648 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car12g01112 704 ProSiteProfiles IQ motif profile. 663 690 IPR000048 GO:0005515
Car12g01112 704 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01112 Car-Chr12:10831623 Car05g01149 Car-Chr5:10977233 3.90E-86 dispersed
Car12g01112 Car-Chr12:10831623 Car11g00596 Car-Chr11:3231929 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01112 K10357 - cpap:110817657 1089.33