Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01123 ATGAGACTCACCAACTCCCTCCCCGACCGCCATAGCAACCGCCGCAACCGGCCGCCAGAGACCGATGCCTCTCAACTCCACCACCACCAAAACCACCTTCAAGCCTCTCATCTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCTTCCCTGGGAACTCCCTACCGGTCTTCCAAATCCCCACTCGAACCTCCCTCCTCAGCCACCGCAACTCCCGCGAAATCCCGACAATGCCGCTTTTCAGATCGGCGACACCACTCCAGCCGCCAAAATGGCCATGGCCATGCTTCACCAGCAGTTACTCACCACCGCGGCAGATTCCAGTCTCCTTACATTGCCTGGAAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGGGAAATTCAACTTCAACTTCACAGAAACAGAGCTTCGGAGCTCCAGTATCAGCCAATACTCCACCTCCGGTGGGGACTGGTTCCGGCGGTGGTGCTAGCGCAGCGGCGCAGCCGCGACAGAGAGTCAGAGCTCGGCGAGGTCAAGCGACGGATCCTCACAGTATTGCGGAAAGATTACGGAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTGAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGCGGCGCCACTGCCTCCTTGCCTTCCCAGCTTGTCGCCGACATGTCCTCCCACTCTGAGACGTTCGCCGGAGCTCCGGCAAGTAATGACACGATGACGGTGACGGAGCATCAGGTGGTGAAGTTAATGGAGAAGGATATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTAGCCACCGCTATCTCCACCGCCACATGTCACAGCCGTCCTGTTACAGCCTCTAGAGGCGGCGGAGATCGCCCCACCTCACCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCACCGTCAAAGATAAGGCCTCTATTTCTCGGCCGTGA 1107 56.64 MRLTNSLPDRHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPWELPTGLPNPHSNLPPQPPQLPRNPDNAAFQIGDTTPAAKMAMAMLHQQLLTTAADSSLLTLPGNDVVEVEGSSSFKCPNPGNSTSTSQKQSFGAPVSANTPPPVGTGSGGGASAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATASLPSQLVADMSSHSETFAGAPASNDTMTVTEHQVVKLMEKDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPVTASRGGGDRPTSPSLSALTVQSTALGNGTVKDKASISRP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10941072 10944634 - Carg17445-RA Car12g01123 158739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01123 368 MobiDBLite consensus disorder prediction 66 82 - -
Car12g01123 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Car12g01123 368 MobiDBLite consensus disorder prediction 1 42 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 7 27 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 327 368 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 28 42 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 336 368 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 135 166 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 129 193 - -
Car12g01123 368 MobiDBLite consensus disorder prediction 66 85 - -
Car12g01123 368 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00442 Car12g01123 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00847 Car-Chr2:6107613 Car12g01123 Car-Chr12:10941072 8.68E-103 dispersed
Car09g00239 Car-Chr9:1316589 Car12g01123 Car-Chr12:10941072 2.61E-21 dispersed
Car10g00442 Car-Chr10:2224460 Car12g01123 Car-Chr12:10941072 1.12E-112 dispersed
Car12g00819 Car-Chr12:7854264 Car12g01123 Car-Chr12:10941072 6.14E-59 dispersed
Car12g01123 Car-Chr12:10941072 Car17g01144 Car-Chr17:8792189 1.58E-48 dispersed
Car02g01553 Car-Chr2:10014537 Car12g01123 Car-Chr12:10941072 1.40E-22 transposed
Car12g01123 Car-Chr12:10941072 Car05g01161 Car-Chr5:11070798 1.85E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4479 PF00010 HLH 1.30E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01123 - - csv:101222794 467.233