Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01132 ATGTGTGTGACGGATTCCGAGCCGGTTGGGGCTGAGAGGGTGCCTTCTGGGAGTACTAATACCAAGCCATGGCGCATGCATTGTGAGTTTTTGGAGACCCAGATGGGGAATCCTGATCAGGAGCTTGATCTTGGTGGAACTAGCGACCTAACCCGTTCTGGGAATTCTTTTCCTCTCGAGAGCATTTCCGAGGACGCTGCAGTGGTAGACAGGAAAGAGAGCCCATCGACTTTTGTTCCTGCGCTTAGATCGGGAGAATGGTCTGATATCGGAAAGCGTCCATATATGGAGGACACTCATGTATGCATTCAGGACATGGCTAAGAAGTTCGGGTGCAGTTTTGTCAACGAGGAAGCGGTCTCCTTCTATGGTGTATTCGACGGTCACGGAGGAAAAGGCGCTGCACAATTCGTTCGTGACCACTTACCAAGAGTCATCATCGAAGATTCCGACTTTCCTTTAGCGCTTGAAAAAGTGGTCACGAGGTCGTTTATGGAGACCGATGCAGCTTTCGCTAGATCTTGCACTCTCGAAACATCTCTATCTTCAGGCACAACTGCACTGACTGCAATGATATTCGGAAGATCTTTGCTTGTAGCAAACGCTGGCGATTGCCGAGCAGTGTTATCAAGACAAGGATGCGCAATAGAAATGTCTAAAGACCACAGACCATGCTGCACAAAAGAACGCAAGAGAATCGAGGCCTTAGGCGGATTCATCGACGACGATTACCTAAACGGACTACTTGGGGTGACTCGTGCGTTAGGAGACTGGCATCTTGAAGGAATGAAGGAAATGAGCGAGAGAGGTGGACCATTAAGTGCCGAACCCGAACTTAAACTAATAACATTGACGAAGGAGGAGGAGTTTTTGATCATAGGGAGCGACGGAATATGGGACGTGTTCACGAGTCAAAACGCTATCGACTTTGCTCGTCGGAGGCTCCAAGAACACAACGACGTGAAGCTTTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCCACGGACAACTTAACAGTGGTGTTGGTTAGCTTTCATTTGGAGCCACCTGAGCCTGTGGTGTTTCAGAGGCCAAGATTTAGACGAAGCATTTCAGCTGAAGGGCTTCAGAACCTGAAATTTCTGCTAGAGGGATAG 1146 48.69 MCVTDSEPVGAERVPSGSTNTKPWRMHCEFLETQMGNPDQELDLGGTSDLTRSGNSFPLESISEDAAVVDRKESPSTFVPALRSGEWSDIGKRPYMEDTHVCIQDMAKKFGCSFVNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIIEDSDFPLALEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLITLTKEEEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKLCCKEIVEEAIKRGATDNLTVVLVSFHLEPPEPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11013834 11019163 + Carg17454-RA Car12g01132 158748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01132 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Car12g01132 381 MobiDBLite consensus disorder prediction 1 23 - -
Car12g01132 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Car12g01132 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00033 Car-Chr9:162494 Car12g01132 Car-Chr12:11013834 4.46E-101 dispersed
Car12g01132 Car-Chr12:11013834 Car17g00957 Car-Chr17:7770078 3.87E-85 dispersed
Car12g01132 Car-Chr12:11013834 Car05g01168 Car-Chr5:11118947 0 wgd
Car12g01132 Car-Chr12:11013834 Car09g00337 Car-Chr9:1867742 7.31E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4481 PF00481 PP2C 2.10E-67 CL0238 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01132 K14803 - csv:101210349 680.633