Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01142 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGATCAAGCGCAGTCCCTCGGCGACGGAACTGGCTTCGGCCGCAGCGGAGCTGTCGACGAGAAGGCCACTCATCACTCGGTTCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGTGGAAAAGAATGTTTTCCCCTACAGAGAAAGCCTTCTCCACAACCCGAAATTTCTTCGCGTTGATATGGAGGACGTTCACGCTTTTGACTCCGATCTTCCGGCCAAGCTTCGATCTGCCCCTGCCGATTTCTTGCCATTGTTTGAGACTGCTGCAGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAAACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCAAAGGAGGATCCGGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACTATAGCTGCGTCAAGGACCAAGGCAAAGGCAACGTATGTGACCTTATTGTGCAAAAACTGTAGAAGTACATTAAGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAACCATATGCCCCAGGCCGGAGAAGAACCATGCCCACTAGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAACTGCAGGAAAACCCAGAAGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGACATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTTTCAAGCTGCCAATTCTGCCGCATCCCACAAAGGAGCAGTTGCAATCAGGCAGCCTTATATCAGGGTTGTAGGCATTGAAGAAACTAATGAAGCTAACTCTCGTGGCCCTGCATCTTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAGCCATTTGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAAGATGTGAAGAAGGCAGTGGCTTGTCTTCTATTTGGAGGATCTAGGAAGAATTTGCCTGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCATCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTTTATACCTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCAGTGATACGGGATAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCCATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCGTCAGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAAACGACAATTCTCTCCAGATTTGATTTAATTTTCATCGTAAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATTATAAAAGTTCATGCATCTGCTGATGCCAATTTGGGTGAAAATAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAATATTGCCGATCTCATTGTCATCCCCGTTTGTCAGAATCTGCGTCCACAATGCTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAAGCTGCTGCAATTCCGATCACAGTTAGGCAGCTGGAAGCTATAGTCAGGTTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAAGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCCACGATGGATGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTAACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGACTGATTGATGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCCCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAGAGGCGTGTCATTTTCCGCAAGGCATGA 2208 44.2 MSGWDEGGIYYSDQAQSLGDGTGFGRSGAVDEKATHHSVLRKFKEFIRGFEVEKNVFPYRESLLHNPKFLRVDMEDVHAFDSDLPAKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLLCKNCRSTLRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSAASHKGAVAIRQPYIRVVGIEETNEANSRGPASFTTEDIEEFKKFAAEPDVYKAICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADANLGENRASKEENWLKRYLQYCRSHCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11075178 11080815 + Carg17464-RA Car12g01142 158758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01142 735 ProSitePatterns MCM family signature. 442 450 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car12g01142 735 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Car12g01142 735 Pfam MCM OB domain 142 277 IPR033762 -
Car12g01142 735 ProSiteProfiles MCM family domain profile. 333 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car12g01142 735 Pfam MCM P-loop domain 320 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car12g01142 735 Pfam MCM N-terminal domain 41 112 IPR027925 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01142 Car-Chr12:11075178 Car14g00959 Car-Chr14:5910123 6.51E-106 dispersed
Car12g01142 Car-Chr12:11075178 Car06g01490 Car-Chr6:10509629 2.29E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01142 K02209 - csv:101211822 1387.47