Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01145 ATGATAGTCGTTGCAGCTGACAATACCATTTACCTTAACGGAGCTATAGTTCCAAGGGTTCATAGTAACTTCGATGAAGAAAGCGAGGGAAGAACAACCTTCACGAGTAGCGAAACGTCCTCTTCCCAGCCCGTTCCAAGACGCTCCAAGCGAGCATTCACTGTCATCGACGTTTCAGATGGGCGGGTGGATAAGATCACTGAAAGTTGGATCTCTGTTGTTGGTGATGAGAGCTTGTTGAATGAGGAGCATTTGATGTACAAAAGAATTTTGGGTTTCACACAGACCCAGAAGAGGGGGAAGAAGAAGAAGAAGGAGAAGAAAGAAGAACAGAGTGTGAAGTTTAAGGATCGAAGAGCTAATTTGGTGGGTGAAAATGGGGTTATGGATCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACAACGAATCAGGCGATTCAGGCACTTAAAATGTTGAGGGAAAACAGAAACAAGTTTGATTTGGTTATCAGTGATGTGAACATGCCAGACATGGATGGTTTTAAGCTTCTCGAGCTCGTAGGCCTTGAAATGGACCTACCCGTCTTTATGTATAGATGCACATATAAATTTAATTGTGTTGAATTGATGGATGGGTTGGTTTTGATTGCATTTCTCTGTTCAAATATGGTTCTAGTGCTGTCTGCGCATAGCGATACCGAGCTTGTAAAGAAGGGAGTTTTTCACGGTGCTTGTGATTATTTGCTGAAACCCGTTCGAATTGAGGAGCTGAAGAATATATGGCAACACGTCCTCCGAAGAAAGACTTCCTCAGCTAAGAACCAAAACGAATGCACTAATGGAAATGACACTTTATGTCAAACTGTTGAAGTTGTAAAAGGTTTCCCGTCTGCGGCGAGTGCTGATAACGGGAAACCTGGTAAAAGGCGGAAAGACGACGATGACGATGAGGAAGGAGGTGAAGAAGAGAGCGCATACGAGACCGACGACTCCTCCTCCCAAAAAAAGCAAAGGGTAGTTTGGTTCGGCGAGCTGCATAGGAAGTTTATTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCCGTTCCTAAAAAGATCCTCGATCTAATGAACGTCGAAGGACTCACAAGAGAAAACAAATACAGGCAGTACCTTAAAAAAATGTGTACTAAGGAAGCTCAGCAATGTAATATGATGGCTGCATTTGGAGGTAAAGACACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACGGGAACGGGAAGGCTCTCGAACGCTACATTCTCGTCGTATCCCTCTCGAGGAATCGTTGGTAGATTAAACTCTACTGCTGGATTGAGCTTACACGGTATCGCTTCCTCGGGAATGATCCAACAGGGTGCTTCCCATAACTTGAGTAGCTCATTGAATATACTCGGGAAACCCCATCCGACTCTCTTGCTTTCAAACCGACCGCCGAGTATATTCAACAGTATTTCGACGCCATCGGATCACATCCAGTCGCATTGGGACAAACACAACGCACCATTTAAAGAGTCAAATTTGATAAATGATGTCTCGAGTTTTACAGTTTCCACGAGCTTCCCTGATGCTAGAGTAGCTGTTGGTTGCTCGAGTAATTATGACTTTGGCGTTTCGAGTCATTCGTTGATGTTACAAGGACATAAGCAACAGAGTCATGGCAGCGGAGAGTTTCGAGATCAGTCTTGTTTTAAGGTATCTCCAATCAACCCGGAACCCGTAGGCTGCAGCACAGGCGTTTCTAATATTTTGGGCGGTCATGGTCAATCGAACAAAAACTGGCAGGGTGTCTCGCTCACTGGAACTTACCCTTCTGATGGAATGCCTGCGATTAATTTGACGATTTCTTCGGCTCAGCCCGATAACGAAAACTTTCCTGTTGGTTTTCCTTCGACTAGCGTGGACTCGAGTTCTCAGCTTGATTTACGAGGGGAGACGCAATGCTACGACGAACTAATGGATCGGGTTGTCGATGCCATGAATGACAGATCAAAGCAACAATGGGAAACAGCTAAACAGAATTACTACGGCAACCATAGTTCTATATTGAGAAACTCTCTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGGACCCGAGTTCAGCAGATCCGAACAATGCGATCTGTCTCGAAAACATCGGTAGCTCTTTGACTAACCAGTTGAATAACGACGCTCCCGCCTTCATTCAGCAAGACGCAGAAACGTTGATGATGGAGACTTGGATGAACTTCGACGGAAAAAGTCTCATGGATCCAACAAAGCTACACTATAGTTTTAGTTCCCTGGATGAGTAG 2373 44.54 MIVVAADNTIYLNGAIVPRVHSNFDEESEGRTTFTSSETSSSQPVPRRSKRAFTVIDVSDGRVDKITESWISVVGDESLLNEEHLMYKRILGFTQTQKRGKKKKKEKKEEQSVKFKDRRANLVGENGVMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAIQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVFMYRCTYKFNCVELMDGLVLIAFLCSNMVLVLSAHSDTELVKKGVFHGACDYLLKPVRIEELKNIWQHVLRRKTSSAKNQNECTNGNDTLCQTVEVVKGFPSAASADNGKPGKRRKDDDDDEEGGEEESAYETDDSSSQKKQRVVWFGELHRKFIAAVNHLGYEKAVPKKILDLMNVEGLTRENKYRQYLKKMCTKEAQQCNMMAAFGGKDTSFRPMASLNGFSMTGTGRLSNATFSSYPSRGIVGRLNSTAGLSLHGIASSGMIQQGASHNLSSSLNILGKPHPTLLLSNRPPSIFNSISTPSDHIQSHWDKHNAPFKESNLINDVSSFTVSTSFPDARVAVGCSSNYDFGVSSHSLMLQGHKQQSHGSGEFRDQSCFKVSPINPEPVGCSTGVSNILGGHGQSNKNWQGVSLTGTYPSDGMPAINLTISSAQPDNENFPVGFPSTSVDSSSQLDLRGETQCYDELMDRVVDAMNDRSKQQWETAKQNYYGNHSSILRNSLVSGNSVADPLDPSSADPNNAICLENIGSSLTNQLNNDAPAFIQQDAETLMMETWMNFDGKSLMDPTKLHYSFSSLDE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11098431 11103014 + Carg17467-RA Car12g01145 158761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01145 790 MobiDBLite consensus disorder prediction 33 48 - -
Car12g01145 790 MobiDBLite consensus disorder prediction 313 348 - -
Car12g01145 790 MobiDBLite consensus disorder prediction 27 48 - -
Car12g01145 790 ProSiteProfiles Response regulatory domain profile. 137 281 IPR001789 GO:0000160
Car12g01145 790 Pfam Response regulator receiver domain 138 213 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01266 Car-Chr1:11487480 Car12g01145 Car-Chr12:11098431 7.46E-11 dispersed
Car08g00859 Car-Chr8:5737675 Car12g01145 Car-Chr12:11098431 7.01E-12 dispersed
Car12g01145 Car-Chr12:11098431 Car14g01419 Car-Chr14:11919856 2.33E-80 dispersed
Car10g00447 Car-Chr10:2251152 Car12g01145 Car-Chr12:11098431 1.65E-104 wgd
Car12g01145 Car-Chr12:11098431 Car09g00371 Car-Chr9:2032866 4.90E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4482 PF00072 Response_reg 5.90E-14 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01145 K14491 - mcha:111013065 899.427