Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01158 ATGGATGCCGCCAACCCCAGCAATGGCGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCGCTTGTCAATTCTTCCTCACAGGTCGCCCTTGTTGGCGCTAATATCTGCCCCATTGAAAGCCTTGATTACGAGATTTTTGATAATGATTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTTCAGATATTTCAATACTTGGTTATTAAATGGTTGTCTTGTTTCTTGATCGGTCTGATTATGGGTCTTGTTGGGTTCTTCAACAATCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTTGTTACTTCGAATATGATGCTTGAGGGCAGGTATTGGATGGCTTTTCTTGTTTTCTCTGTTTCAAATCTACTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGCCCCCTAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGTGTGGACGCCCCCGGAATATTATCGCCCAGGACATTGTTAGTGAAGATTATTGGCAGCATTGCTATCGTGTCGTCATCTATGGTCGTTGGAAAAGCTGGGCCTATGGTTCATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGTGTTTCAAAGTATTTGGTTTAACTTGGAGATGGCTATACCATCTCAAGAAGGATCGAGATAGGCGGGATCTTGTAACATGTGGTGCTGCTGCTGGAATCGCTGCTGCTTTTCGTGCTCCCGTTGGGGGCGTGTTGTTTGCTTTTGAAGAGATGGCATCATGGTGGAGAAGCGCCCTTCTGTGGCGAGCATTTTTCACGACGGCTATCGTTGCTGTCGTATTACGCTCACTGATCGATGTTTGTTTGAATGGATTATGTGGATTGTTTGGTAAAGGGGGACTCATAATATTTGATACCTACTCAGACTTCCCCTCATATCACCTCAAAGATCTACCTCCTGTGCTTGCCCTTGCTTTCATTGGAGGCATTCTTGGAAGCTTTTATAATTTTCTTTTAACCAAAGTTCTTCGTGTTTACAATCTCATACACGAGAAAGGCATTGTTTACAAAGTTTTACTGGCTTGCTCTGTCTCGATTTTCACGTCATGTCTTCTTTTCGGATTACCGTGGTTCGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATCTGTCCTACGATAGGTCGATCGGGTAACTTCAAGAAGTTTCAGTGTTCTTCTGGTCACTACAATGATCTTGCAAGTCTTATATTTAACACCAATGATGATGCCATAAAGAACCTCTTTAGCAAAGGCACAGACTCTGAGTTTCAATTCTCATCAATGCTCACATTTTTCGTTACATGTTTTTCGTTGAGCGTTCTTAGTTACGGTACGGTTGCTCCGGTTGGCCTGTTTGTTCCTGTTATTGTGACAGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCATACACAAACCTTAGCCATGGCTTCTTTGCCATATTGGGTGCTGCTTCGTTTCTCGGGGGGTCGATGAGAACGACCGTTTCTTTATGTGTTATTATGCTCGAATTGACCAATAATTTGTTGTTGCTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACTGTGGCTGATGCTTTCAACTGTAATATTTACAACCAGATCATGAAAGCCAAGGGGTTCCCATACCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTGACTGTTGCCAGTGTGTTAACAAGTCCACTTCAATTATTCCGTGGCATCGAGAAGGTTCGTAACGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCCATCATCGATGAGCCTCCTTTCTCGGAATTCCCTGTTTTATATGGTCTAATTCTCAGAGCTCATCTCATCGTGTTGTTAAAGAAGAAAGCTTTCTTGTCAGTTCCGACACTAGGATTAGAAAGACAGGATGCCTTAAAGCTATTATCAGCTGATGATTTTGCAATGATGGGTTCGGGCGATGTCGATCGGATTGAAGATATTCAGTTGACTGATGAAGAGATGGAGATGTTCATCGACCTACATCCATTCGCTAATACCTCGCCTTGTACTGTCTTGGAGACGATGTCGTTAGCAAAGGCTTTTGCAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCTAAGGTCCCCGGGGTGAAGATCGCCCGTGGTCGGTATATTGACTCGGCACGACTTCATGCCGGATTACATTCTGAGTTTGCATCCATTGCTGGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCATCTGAAGAAAAAATTCTTCTAGTGGATCACCAAACATATAGAAAAGGCAAGTGA 2361 43.92 MDAANPSNGDEESIITPLLAPQKSLVNSSSQVALVGANICPIESLDYEIFDNDFFMQDWRSREDFQIFQYLVIKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYWMAFLVFSVSNLLLTLFASVITALICPLAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIIGSIAIVSSSMVVGKAGPMVHTGACVASLVGQGCFKVFGLTWRWLYHLKKDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRAFFTTAIVAVVLRSLIDVCLNGLCGLFGKGGLIIFDTYSDFPSYHLKDLPPVLALAFIGGILGSFYNFLLTKVLRVYNLIHEKGIVYKVLLACSVSIFTSCLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCSSGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQFSSMLTFFVTCFSLSVLSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNCNIYNQIMKAKGFPYLEGHVEPYMRQLTVASVLTSPLQLFRGIEKVRNVVNVLKWTSHHGFPIIDEPPFSEFPVLYGLILRAHLIVLLKKKAFLSVPTLGLERQDALKLLSADDFAMMGSGDVDRIEDIQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKAFAIFRETGLRHMLVIPKVPGVKIARGRYIDSARLHAGLHSEFASIAGEEQMEKVKNQISSEEKILLVDHQTYRKGK 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11153212 11158492 - Carg17480-RA Car12g01158 158774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01158 786 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00826 Car-Chr4:4828587 Car12g01158 Car-Chr12:11153212 0 dispersed
Car12g01158 Car-Chr12:11153212 Car15g00084 Car-Chr15:497110 0 dispersed
Car12g01158 Car-Chr12:11153212 Car16g00792 Car-Chr16:5197673 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01158 K05016 - csv:101216071 1285.78