Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01175 ATGTCAAGCTGCATCAACAGTGCACAGGAGCAACTCTGCTATATTCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTAGACATAGTGACAGTCCGATGTGGTCACTGCAGCAACCTCTGGTCGGTGAACATGGCCGCCGCTTTCCAATCTCTCTCATGGAAAAATTCTCAGGCATCAAGCCACAGCCACAATGGAAATGCAGCTGATTACAGGGTAGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGACGAGAGCACCAATTCAAAACACTACAAATGATGATCAAAGAGTAATCAACAGACCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATAAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTACCCACACATTCAATGCCTCATGCTGGAAGCCAACAATCTCAAGACTCAGAATGATGGATCTGAGAAGCATTACATGTCAGTGCCAGGGCTGCACTATTGA 570 43.68 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNSQASSHSHNGNAADYRVELGSSSKCNNKMKTRAPIQNTTNDDQRVINRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQCLMLEANNLKTQNDGSEKHYMSVPGLHY 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11290190 11294191 + Carg17497-RA Car12g01175 158791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01175 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Car12g01175 189 Gene3D High mobility group box domain 109 171 IPR036910 -
Car12g01175 189 PANTHER AXIAL REGULATOR YABBY 5 1 180 - -
Car12g01175 189 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Car12g01175 189 SUPERFAMILY HMG-box 105 158 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01175 Car-Chr12:11290190 Car15g01044 Car-Chr15:8220769 1.82E-50 dispersed
Car18g01013 Car-Chr18:10558350 Car12g01175 Car-Chr12:11290190 3.22E-43 transposed
Car10g00501 Car-Chr10:2522223 Car12g01175 Car-Chr12:11290190 9.30E-81 wgd
Car11g00415 Car-Chr11:2339258 Car12g01175 Car-Chr12:11290190 1.19E-63 wgd
Car12g01175 Car-Chr12:11290190 Car05g01205 Car-Chr5:11394486 7.63E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4484 PF04690 YABBY 5.30E-67 CL0114 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01175 K25796 - csv:101219877 333.954