Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01194 ATGGCCAGCATAACCCGAGACGATTCCGACCACGACAGCACAAGCTCCTCCCTCACCCTCCCAGACTCCACCCGCAGCTGGCTGAGCAACCTAAGCATCAGCAGTCGCCGAAGCAGCACGTCCGCCTTAGACGCCGCCTTATCCCCCTACAAACCACACAAAGCAAACCACGTGGCATGGGAGGCGATGCGGTGGGTGAGACGCGTGAAAGGGCGCGTGGGGCTGGAGCACTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGACATAGGGAATGTTTATTTGTGCGAAATAAGGAACCCGGTGGTGGGGCTGGCGCAGTGCTATTACGCCATGAAAGTGGTGGATAGAGAAGCCGTGTCGGTGAGGAACAAAGCGAGGAGAGCGGACATGGAGAAGGAGATTCTTAAGCTCATTGATCATCCCTTTTTGCCTACGCTTTATGCCGAGTTTGAAGCTTCCCATTACTCCTGTTTGGTTATGGAGTTTTGTCCCGGCGGCGATTTGTACGCCGCCCGCCAACGCCTCCCCGGAAAACGCTTCCCCATTTCTTCCGCCAAATTTTATGCGGCGGAGATAATTTTAGCGTTAGAGTATTTGCATATGATGGGGATAGTTTACAGAGATTTAAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTATGTCTCAAATGCGACGTCGTTCCCAAGCTCATCCGTTGCAGGACCACCGCCGAACGCCACGTCACAAAAACCTACTCCACCTCATCAACTACCTCCTGCGCCGCCGCTCCAATCCACCCTGTCCTCTCCTGTTTCTCCATTACCCGCCGCCCAAACTCCACCACCATCACCACCATAACCGAACACGCCGCCGAATCCGCCGCCACTGTAGACGGCGAGTTCGACCCAGAACCGGAACTGATAGCGGAGCCGATGAATGCCCGGTCTAAATCCTTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAAGGACACGGCAGCGCCGTCGATTGGTGGACGTTGGGGATTTTCCTCTATGAAATGTTGTACGGAAAAACCCCATTTAAAGGGGAAAATAACGAGAAAACCCTAATGAATATCTTGAAGCAGCCATTGACGTTTCCAAGAATTGGGGTTAGTAGCAACAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTAATTAGGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCATTAATCCGCTCGGTTCGTCCTCCGCAAGTCCCGAATTCCGATCATCTTCTTCACAAAACCCTAACCCAATCAAAATACCCGTCCAACTACGTACCCAAATTGACCAAGAAACAACGACAACAACCCTACCAAATCCCGTCTCACCATTTTGATTACTTCTAA 1464 51.43 MASITRDDSDHDSTSSSLTLPDSTRSWLSNLSISSRRSSTSALDAALSPYKPHKANHVAWEAMRWVRRVKGRVGLEHFRLLRRVGSGDIGNVYLCEIRNPVVGLAQCYYAMKVVDREAVSVRNKARRADMEKEILKLIDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRLPGKRFPISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTAERHVTKTYSTSSTTSCAAAPIHPVLSCFSITRRPNSTTITTITEHAAESAATVDGEFDPEPELIAEPMNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLTFPRIGVSSNKEYEEMVKVEDLIRKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRPPQVPNSDHLLHKTLTQSKYPSNYVPKLTKKQRQQPYQIPSHHFDYF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11375556 11377811 + Carg17516-RA Car12g01194 158810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01194 487 MobiDBLite consensus disorder prediction 1 22 - -
Car12g01194 487 Pfam Protein kinase domain 79 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01194 487 Pfam Protein kinase domain 318 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01194 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Car12g01194 487 ProSiteProfiles Protein kinase domain profile. 78 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01224 Car12g01194 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00596 Car-Chr4:3400951 Car12g01194 Car-Chr12:11375556 3.34E-117 dispersed
Car12g01194 Car-Chr12:11375556 Car07g00311 Car-Chr7:1591049 1.47E-153 dispersed
Car12g01194 Car-Chr12:11375556 Car05g01224 Car-Chr5:11483433 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89252 PF00069 Pkinase 8.90E-32 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01194 K08286 - csv:101202905 733.021