Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01202 ATGGCGTCTGCAATTTCTCTTTGCTCTGTTTTTGTTGTTGTTCTTGTTCTGACTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACTTGCCCTTCTCGATTTCCTCTCTAAAGCTCCTCACGCCAATCGGCATCAATGGAATACCTCCAATTCCGTCTGTAATTGGATCGGCGTTCAGTGCAATTCCAATCAGTCGTTTGTTTATTCCCTCCGTTTGCCCGGCGCTGGCCTCGTCGGTACGATTCCGGCCAACACGATCGGTAAATTGACTCAGCTTCGAGTTCTCAGCCTTCGCTCTAATCTTCTCTCCGGCAAGATCCCGTCGGATTTTTCTAATTTGGTAATGCTGCAGAATCTGTATCTTCAGGATAATGCATTCTCCGGCGAGTTTCCGCCCAGTTTGACTCGTTTGACTCGGTTGACTCGGCTGGATTTGTCGTCGAATAACTTTTCCGGTACGATTCCGGCGGCCATCGACAATCTGACCCACTTGACGGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCAATCCCGAGAATCTCGGCCGTTAATTTAACAAACTTCAACGTCTCTAACAACAAACTCAACGGCTCGATTCCAAAACCGTTAGTGAAATTCCCAACCTCCTCCTTCGCCGGAAATCTAAATCTCTGCGGCGGACCATTCCCCTCCTGCAACCCATCCACCTCTCCAGCACCGCCGCCACAAAACCCACCAGCCGTCACTGTCGGGAAACCAAAAAACCGGTCCACAGCTGCCATAATCGGGATCATCGTCGGCGGTGTCTTCGCCGCAATTCTCCTCCTCCTCTGTATCCGGCGCCGCTCCCACCATCCAGCGAAGTTCCGGAAGCCATCGGCGGCGGCGAGCGCAATCTCGATAGTGGAGGCCGGGACGTCGTCGTCGAAATACGACATTACCGGAGGGTCGGTGGAGGCGGCGGAGAGGAACAAGCTGACGTTCTTCGAAGGGGGAAATTACAATTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGCTGGGGAAAGGAGACGTGGGAACGTCGTATAAGGCGGTGCTGGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGCGGCGACGAAGAAGGAATTCGAGATTCAAATGGAAGCTTTGGGGAAGATTAAACATCAAAATGTGGTTCCGCTTCGAGCTTTTTACTTCTCCAATGATGAGAAATTGCTGGTTTTTGATTATATCTCCACCGGAAATTTGTCGGCGAGCCTTCACGGTAGCAGAAGCTCCAGTAGGAAACCATTAGATTGGGATTCAAGAATGAAAATAGCTCTAAGCGTGGGCAGGGGACTTGCCCATCTCCACCTCCCCTGCAACCTGGTTCACGGCAACATTAAATCCTCCAACGTCCTTCTTCGGCCACACCACGACGCCTGCATCACCGACTTTGGCCTCAACCCATTCTTCGCCACCGCCACGCCGCCGAATCGTCTCGCCGGTTACCGAGCGCCAGAGGTCCTGGAAACCCGTAAAGTCACCTTCAAATCTGACGTTTACAGCTATGGCGTCCTGCTCCTCGAGCTCTTGACCGGTAAAGCCCCCAACCAACAGTCCCTCGGCGAAGACGGCATCGACCTTCCCCGGTGGGTTGAGTCCGTCGTCCGGGAGGAATGGACGGCAGAGGTTTTTGACGTTGAATTGATGCGATTCCACAACATTGAAGAAGAGATGGTTCCGTTGCTTCAAGTCGCAATGTCTTGCGTTTCCACTATCCCCGATCAACGACCAACGATGTCAGAAGTTGTACGGATGATCGAAGACATGAACAGAAGTGAGACTGATGACGGGTTGCGCCTGTCTTCCGATGACCCCTCTAAAGGCTCCGATGTTAACATGTCGTCGGCTGAATCGAGAACTTCGTCGTAG 1920 52.6 MASAISLCSVFVVVLVLTQWVNSEPTQDKLALLDFLSKAPHANRHQWNTSNSVCNWIGVQCNSNQSFVYSLRLPGAGLVGTIPANTIGKLTQLRVLSLRSNLLSGKIPSDFSNLVMLQNLYLQDNAFSGEFPPSLTRLTRLTRLDLSSNNFSGTIPAAIDNLTHLTGIFLQNNGFSGSIPRISAVNLTNFNVSNNKLNGSIPKPLVKFPTSSFAGNLNLCGGPFPSCNPSTSPAPPPQNPPAVTVGKPKNRSTAAIIGIIVGGVFAAILLLLCIRRRSHHPAKFRKPSAAASAISIVEAGTSSSKYDITGGSVEAAERNKLTFFEGGNYNFDLEDLLRASAEVLGKGDVGTSYKAVLEEGTTVVVKRLKDVAATKKEFEIQMEALGKIKHQNVVPLRAFYFSNDEKLLVFDYISTGNLSASLHGSRSSSRKPLDWDSRMKIALSVGRGLAHLHLPCNLVHGNIKSSNVLLRPHHDACITDFGLNPFFATATPPNRLAGYRAPEVLETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVESVVREEWTAEVFDVELMRFHNIEEEMVPLLQVAMSCVSTIPDQRPTMSEVVRMIEDMNRSETDDGLRLSSDDPSKGSDVNMSSAESRTSS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11466762 11470025 - Carg26010-RA Car12g01202 158818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01202 639 Pfam Leucine rich repeat 79 126 IPR001611 GO:0005515
Car12g01202 639 MobiDBLite consensus disorder prediction 622 639 - -
Car12g01202 639 MobiDBLite consensus disorder prediction 607 639 - -
Car12g01202 639 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Car12g01202 639 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01202 639 ProSiteProfiles Protein kinase domain profile. 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01202 639 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00462 Car12g01202 CCT
Car10g00545 Car12g01202 CCT
Car05g01237 Car12g01202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01202 Car-Chr12:11466762 Car20g00263 Car-Chr20:1527659 0 dispersed
Car10g00545 Car-Chr10:2736874 Car12g01202 Car-Chr12:11466762 0 wgd
Car11g00462 Car-Chr11:2548674 Car12g01202 Car-Chr12:11466762 0 wgd
Car12g01202 Car-Chr12:11466762 Car05g01237 Car-Chr5:11570461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89253 PF00069 Pkinase 1.70E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01202 - - csv:101205802 966.837