Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01214 ATGAAGAGCGATACCCATTTCACCATTCATTCTTTGCTGCAAATTTTCCTGTTCTTTGGCACTCTTTTGTGCCTAGCTTCTTCTGAAGAGTTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGCGGACTGACCGACGCTGAAGCTCACTACATCCGTCAACGGCAACTTCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCACCGTCGATCCTAAGCTGGTTTTTGGAAACGACAGGCTTAGAAATGCTTACATAGCTTTACAAGCTTGGAAGCAAGCGATTCTATCTGACCCTTTGAATCTTACTATTAATTGGGTTGGATCTGATGTTTGTAGTTACAAAGGGGTTTTCTGTGCTGAGGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGAATCGACCTTAACCATGGCGACATTGCCGGCTACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTTCATATCAACTCCAACCGGTTTTGCGGCACTGTGCCTCACAAGTTTAAGCACTTGAAGATGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCTTGTGGTTCTGGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAATGAGTTTGAAGGGACCGTTCCTAAAGAGCTTTTCGACAAGGATTTGGACGCTATTTTCATTAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAACAAATTTCACGGCTGTGTGCCGGGGAGTATTGGGAATATGACGAGGTTGAATGAGATTATTTTGATGAATAATGGGTTTCGGTCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTGGATTTGAGTTTTAATGAGTTTCTTGGGGCGTTGCCGGAGACGATCGGTGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGGTTCCGGAGAGTATCTGTAAGTTGCCGAATCTGAAGAACTTTACCTATTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGGCTTTGATGATCGGAGGAACTGTATTCCGAAGCGGCCGGTGCAGCGTTCGGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTTCCATCTCCGCCGCCACCTGATTGGGATTCACACCCCATTTACCGACCACACTCTCCTCCCCCGCCTCCACCTTCCCCACCTCCCCACCTTCCGCCCTTCTCCACCGCCCCCACCACCGCCAGTCTACTCTCCACCCCCACCTCCCCCATCTCCTCCGCCGCCTTCCCCTCCACCGCCATCACCCCCACCGCCACCCACCAGTTTACTCTCCACCCCCACCTCCATCATCACACCCCACCATCTCCACCGCCGCCCTCACCCCCACCGCCAGTTTACTCTCCACCCCCACCACCCACCATCTCCGCCACCACCAGCGCCGGTGTATTGCATCCGACCACCACCACCCCCGCCTCCACCGAACTCTCCCCACCTCCACCAAATTCCCCACCTCCTCCTCCATTATTCTCTCCACCCCCACCCATTTACTATTACAATTCACCGCCACCGCCCAACTCTCCACCACCCCCACCAATGTACTCTCCTCCGCCACCGCCCCACTCCCCACCTCCTCCACCGCATTCACCACCACCTCCAATCTATCCTTACCTATCTCCCCCACCTCCACCTGTCTATTCCCCTCCTCCACCTGTCTATTCCCCACCTCCACCCGTCTATTCCCCGCCACCACCACCACCATGTATAGAGCCACCCCCACCACCACCGCCGCCATGTATAGAATATCATGAACCCCCACCTCCACCATCACCATCACCACCGCCACCCTTCCAATACCTTCCTCCACCATCTCCTTCCCCCCCACCACCACCACCACCCACCCCAGTTTTCCATTCACCTCCCCCACCAATTTATTACTCTCCACCACCACCGTCACCGCCGCCGCCCTCATCCCCACCACCATCACCCGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA 2208 53.89 MKSDTHFTIHSLLQIFLFFGTLLCLASSEEFLQVSGHGGGGGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFGNDRLRNAYIALQAWKQAILSDPLNLTINWVGSDVCSYKGVFCAEAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKHLKMLFELDLSNNRFAGKFPLVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVLDLSFNEFLGALPETIGGMVSLEQLNVAHNFLSGKVPESICKLPNLKNFTYSYNFFTGEAPSCLALPGFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPDWDSHPIYRPHSPPPPPPSPPPHLPPFSTAPTTASLLSTPTSPISSAAFPSTAITPTATHQFTLHPHLHHHTPPSPPPPSPPPPVYSPPPPPTISATTSAGVLHPTTTTPASTELSPPPPNSPPPPPLFSPPPPIYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPFQYLPPPSPSPPPPPPPTPVFHSPPPPIYYSPPPPSPPPPSSPPPSPVYEGPLPPIYGVSYASPPPPPYY 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11564190 11566397 - Carg25996-RA Car12g01214 158830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01214 735 MobiDBLite consensus disorder prediction 542 602 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 459 479 - -
Car12g01214 735 Pfam Leucine rich repeat N-terminal domain 89 121 IPR013210 -
Car12g01214 735 MobiDBLite consensus disorder prediction 648 714 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 433 458 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 433 479 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 526 541 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 495 602 - -
Car12g01214 735 MobiDBLite consensus disorder prediction 500 525 - -
Car12g01214 735 Pfam Leucine rich repeat 298 351 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00558 Car12g01214 CCT
Car05g01248 Car12g01214 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01292 Car-Chr5:11908213 Car12g01214 Car-Chr12:11564190 7.82E-95 dispersed
Car06g01193 Car-Chr6:8737566 Car12g01214 Car-Chr12:11564190 1.14E-146 dispersed
Car11g00543 Car-Chr11:2938385 Car12g01214 Car-Chr12:11564190 1.37E-101 dispersed
Car11g01605 Car-Chr11:12768502 Car12g01214 Car-Chr12:11564190 9.83E-114 dispersed
Car12g01214 Car-Chr12:11564190 Car14g01568 Car-Chr14:12812508 5.15E-139 dispersed
Car10g00558 Car-Chr10:2821826 Car12g01214 Car-Chr12:11564190 0 wgd
Car11g00470 Car-Chr11:2579101 Car12g01214 Car-Chr12:11564190 0 wgd
Car12g01214 Car-Chr12:11564190 Car05g01248 Car-Chr5:11663486 0 wgd
Car12g01214 Car-Chr12:11564190 Car09g00427 Car-Chr9:2382020 1.29E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01214 - - csv:101210261 749.584