Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01220 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGTGACCAATACTACATCTCCGCCGCCGGTTACTCCCAGTGCGCCGCCGCCATCGACACCTTCGCAGCCCCCACCGGCCGCTACACCTCCACCAACTACCACTCCGCCTGCCGCTGCAACGCCGCCCGCTCCTTCTCAGCCTCCGCCGACATCCGCCCCACCTCCAGCCACTCCCTCTTCGCCACCACCGGTTACTCCCCAGCCCACCCCGCCCACTGGCTCTCCCTCGAGGCCATCTCCCTCTCCTCCGCCATCTACTCCCTCAACTTCTCCACCTCCTCCGTCTCCTCCGGGCGGCCACAGTCCGCCTCCTCCGACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCATCAAGGCCGTCGTCATCGCCGCCTTCCTCCTCCTCCTCGCCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTCGTAATTGTTCTTTTGCTAAGTATAATGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGATGAAGAAGGATTCTATCCACACCCTCCGTCAGGACCAAAAGTGGACCCTTATGGTGGCCAGCAGCAATGGCAGCACAATGCTCCTCTGCCACCCGATCCGTTAATGGGGATGGCGCCTAAGCCATCTCCTCCTCCTGCCGTTGCATCCCGACCCCTGCACTCGCCGACCGGGAGTCGGCCCTCGCCTCCACAGCTTTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCTGGCTCTGAAAATCCACTCCCTCCACCCCCACCACCTCCTATGGCCTTTGGTTTCTCAAAAAGTACTTTCACTTATGAGGAATTGTCAATGGCGACCGATGGATTTTCAGATGCGAATCTCCTCGGACAAGGCGGATTCGGATATGTTCATAGAGGAGTTCTTCCTAATGGCAAGGAAGTTGCAGTCAAGCAGCTGAAAGTCGGGAGCGGGCAAGGCGAACGAGAATTTCAGGCCGAAGTCGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTCGAATCGCTTTAGGATCGGCAAAGGGATTAGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAATATTCTGTTGGATTTCAAGTTTGAAGCAATGCGATACGTTTGTGCCGGGCCGATATCGAATGTAGCTAAGCTAAACTCCAATGGAGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGTTAATACCCACGTGTCGACTCGAGTGATGGGTACTTTCGGAGTCATAGCGAGTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACCGGTTTTAAAAACCTTGAGGGAAAGCCCAAAGACGACAATATTTGCTAGCGGTGTGCTTGAGCTGTTACAAATGGTGTTAGAGCCATTCACCGGACAGTGTGCCAACGAGGACGCTAGCTATCTTGCACCGGAGTATGCCTCGAGTGGCAAACTTACTGAGAAGTCGGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCGGTCGATACGAGTAATACTTTCATGGAAGATAGTCTCGTAGACTGGGCCAGGCCGTTACTGAACCGAGCTCTAGAAGATGGAAACTTCGATGCTTTGATCGATCCGAGTATTCAGAACAACTACAACCACACTGAGATGGCTCGTATGATCGAATGTGCTGCTGCTTGCGTGCGACATTCTGCAAGGCGTCGACCTCGAATGAGCCAGGTAGTACGAACGCTCGAAGGAGATGCATCACTATCGGATCTCAACGAAGGAATCAAACCCGGGCAGAGCTCGATGTATAGTTCTCATGGAAGCTCAGACTATGACACCCATCAGTACAACGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCTCGGAGTATGGAGCGAGTAGTGAGTACAGCCGACCGACAAGCGAGTACGGGCTGTATCCGTCGGGGACGAGCAGCGAAGGCCAAACGACTAGAGAAATGGAGATGAGAACAGTGAAGAAAGAGAGTGGAGGCTTCAGTGGAAACAATTGA 2259 52.15 MSTPTPAPTSPPVTNTTSPPPVTPSAPPPSTPSQPPPAATPPPTTTPPAAATPPAPSQPPPTSAPPPATPSSPPPVTPQPTPPTGSPSRPSPSPPPSTPSTSPPPPSPPGGHSPPPPTSHTPSTPSRSPPPPSRPSSSPPSSSSSPNISTGLVVGIAIGGVVIVLLLSIMCLCCTKKRRRRRDEEGFYPHPPSGPKVDPYGGQQQWQHNAPLPPDPLMGMAPKPSPPPAVASRPLHSPTGSRPSPPQLYMSSSGGSGSMYSGSENPLPPPPPPPMAFGFSKSTFTYEELSMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMRYVCAGPISNVAKLNSNGVADFGLAKFSSDVNTHVSTRVMGTFGVIASVRSHIGWRGERSILIRVWKPLPSRPVLKTLRESPKTTIFASGVLELLQMVLEPFTGQCANEDASYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPSIQNNYNHTEMARMIECAAACVRHSARRRPRMSQVVRTLEGDASLSDLNEGIKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSSEYGASSEYSRPTSEYGLYPSGTSSEGQTTREMEMRTVKKESGGFSGNN 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11628396 11632051 + Carg18575-RA Car12g01220 158836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01220 752 MobiDBLite consensus disorder prediction 180 279 - -
Car12g01220 752 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Car12g01220 752 MobiDBLite consensus disorder prediction 242 263 - -
Car12g01220 752 MobiDBLite consensus disorder prediction 706 734 - -
Car12g01220 752 ProSiteProfiles Protein kinase domain profile. 296 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01220 752 MobiDBLite consensus disorder prediction 666 684 - -
Car12g01220 752 MobiDBLite consensus disorder prediction 663 686 - -
Car12g01220 752 Pfam Protein tyrosine and serine/threonine kinase 301 464 IPR001245 GO:0004672|GO:0006468
Car12g01220 752 Pfam Protein tyrosine and serine/threonine kinase 546 655 IPR001245 GO:0004672|GO:0006468
Car12g01220 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Car12g01220 752 MobiDBLite consensus disorder prediction 1 139 - -
Car12g01220 752 MobiDBLite consensus disorder prediction 704 752 - -
Car12g01220 752 MobiDBLite consensus disorder prediction 1 147 - -
Car12g01220 752 MobiDBLite consensus disorder prediction 215 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00573 Car12g01220 CCT
Car11g00491 Car12g01220 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00491 Car-Chr11:2668055 Car12g01220 Car-Chr12:11628396 4.08E-105 dispersed
Car12g01220 Car-Chr12:11628396 Car15g00207 Car-Chr15:1142382 1.16E-128 dispersed
Car10g00573 Car-Chr10:2897136 Car12g01220 Car-Chr12:11628396 0 wgd
Car11g00490 Car-Chr11:2666520 Car12g01220 Car-Chr12:11628396 2.36E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89254 PF07714 PK_Tyr_Ser-Thr 4.40E-26 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01220 - - bhj:120079307 820.846