Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01226 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGGCTCCATTAGTTTCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGATTCCCCTATGTCAAGAGCAAGGCCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTTTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTTTCCAAAAAAAGGAAAGGTCAAGATCTCTACTTTGGATCGACGGCCAAGGACCTATCAACTCATAGACCAGTAGCATTTCAACAGGCAAATCATGTCAAAGCCACTGCTCCTCCGTTACCATCCTTCCCCATTGCTGGTGTTGGAAGCCCGTCATTGTTGGGTCCCTCAAAGTTTACCTATAGGTCTTTAATGGCAGACATCATTCAATCACAAAATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTATCAAGTGAAGCTGCCAAAACATTTCAAGATCAAACAAATGCTACAGAAAAGCAAGCTGATTGTCAGATAGAAACTTCTGTTGCATCATCCAATCAAGATACGTTGCAGAAAAAAGATGTATCGAACGAGAAAGCTGCAGCCGATGATTGTTCAAGTGCAAACCAGACCAACAAAACCACCACTGATGATTCCAATTCAGACGGTAGATTAATGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCCGAGCAGGAGAGGATCGTCCTTACGAAGTTTCGGGATTGTCTCAATAGACTCATCACTTTAGGAGAAATAAAAGAGACACAGTGTTCCACTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACTCACTCAACCATGGCACTACAAATTCTAGAACCGAAACGCAAACTCATTTGGACCAACTCAACAATAAAGCTACGAAATCTTCGATCCCACCGTCGGGGAAGATCACGCAGACGGTAACCGCTGCAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCGTGA 1674 45.46 MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQAPLVSQNLQQAQPKPQPQMVAASIAPLAPHSSVRTVKSDSPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQDLYFGSTAKDLSTHRPVAFQQANHVKATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQNLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQIETSVASSNQDTLQKKDVSNEKAAADDCSSANQTNKTTTDDSNSDGRLMGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSTLARSEVGNQEHSLNHGTTNSRTETQTHLDQLNNKATKSSIPPSGKITQTVTAAVMTLSNDQRQKVLPLS 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11661240 11665383 - Carg18581-RA Car12g01226 158842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01226 557 MobiDBLite consensus disorder prediction 493 513 - -
Car12g01226 557 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Car12g01226 557 MobiDBLite consensus disorder prediction 392 451 - -
Car12g01226 557 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Car12g01226 557 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Car12g01226 557 MobiDBLite consensus disorder prediction 47 77 - -
Car12g01226 557 MobiDBLite consensus disorder prediction 17 32 - -
Car12g01226 557 MobiDBLite consensus disorder prediction 1 119 - -
Car12g01226 557 MobiDBLite consensus disorder prediction 413 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00582 Car12g01226 CCT
Car11g00499 Car12g01226 CCT
Car10g00582 Car12g01226 ECH
Car11g00499 Car12g01226 ECH
Car05g01259 Car12g01226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01226 Car-Chr12:11661240 Car17g00197 Car-Chr17:1181670 6.54E-34 dispersed
Car10g00582 Car-Chr10:2937435 Car12g01226 Car-Chr12:11661240 5.89E-158 wgd
Car11g00499 Car-Chr11:2700853 Car12g01226 Car-Chr12:11661240 0 wgd
Car12g01226 Car-Chr12:11661240 Car05g01259 Car-Chr5:11732054 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4489 PF03638 TCR 2.90E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01226 - - csv:101211978 946.421