Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01227 ATGGAATCTCCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGACATCATCCGGAAGTACCAGATCCTCGAGCGTATCGGATCCGGCGCATATTCCGATGTTCACCGTGCACGGCGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATTGTCGTTCTGCATGAGTACTTTTGGCGCGAGGATGAGGATGCTGTGCTTGTTCTTGAGTTTCTGAAGACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGTGGAGAATCCGGGTGGAGGCTCGCGGTCGATGAGGTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGAAATATGATCGTGCATAGGGATTTGAAACCGAGCAATTTGTTGATCGCCGACGATGGCGTGCTCAAACTTGCCGATTTTGGACAGGCAAGAATATTGATGGAGCCAGAATTTGATGAATCCAATGAGATTTCACAACCAAGTGAGATGAATTCTTCTGATCAAGTACCTGCAATTTCTCAGCCACCTGCAATTTTTTCAGGAACAGAAAGTTCGGTTCGAGAAGGAAACAGAACTGAAGAACAAGAACCAATTAGCAAAGAGGAGTATTTTAGAGCTTTAGACGAGCTGAAAGCAAAAAGTTCAGAAACTGAATTTGATAAGGAAACATGTACTTATGATGGAGATACGTCTTGCATAGCAACGTGTACCACGAGTGATCTCGAAGAGGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAGGGTTCTCTCACTTCTTGCGTCGGAACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACGAACTACGGTTTGGAGATCGACTTATGGTCGTTGGGTTGCATTTTTGCAGAACTTTTTACATTGGAACCACTTTTTCCAGGAACTGCTGACATTGATCAAATAAGCAGAATTTTCACTACTCTAGGCAACTTGACTGAAGATTCTTGGCCAGGTTGTTCCAAACTTCCAGATTTTCAGATCATATCATTCAACAACATATACAAGCCTATTGGCCTCGAAGCATGTCTTCCCAACCGATCTCCTGATGAAATTTCCATCGTTAAAAGACTTCTTTGCTACGACCCGTCTAATCGGGCGACAGCCATGGAATTGCTCCAAGACAAGTATTTCACCGATGAGCCACTTCCTGTTCCCCTGTCTGAGCTTCATATTCCTTCAACCAGAACTGGACAGGATCTGGATTCCCCTGCAGGATGGTACAACAACAATGACTCAGACTCCGATATGGACGTACTCGGCCCCTTGAACGTTACCACAAGGGCCACTCGGTTAACCAGGTTCGGGTACAAGTACGTGCAAGCTAGCTAA 1470 46.94 MESPSAKSWSIHTRPDIIRKYQILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFLKTDLATVIAEAKKRGSDGGESGWRLAVDEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLIADDGVLKLADFGQARILMEPEFDESNEISQPSEMNSSDQVPAISQPPAIFSGTESSVREGNRTEEQEPISKEEYFRALDELKAKSSETEFDKETCTYDGDTSCIATCTTSDLEEDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQISRIFTTLGNLTEDSWPGCSKLPDFQIISFNNIYKPIGLEACLPNRSPDEISIVKRLLCYDPSNRATAMELLQDKYFTDEPLPVPLSELHIPSTRTGQDLDSPAGWYNNNDSDSDMDVLGPLNVTTRATRLTRFGYKYVQAS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11666806 11669592 - Carg18582-RA Car12g01227 158843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01227 489 MobiDBLite consensus disorder prediction 205 224 - -
Car12g01227 489 ProSiteProfiles Protein kinase domain profile. 21 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01227 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Car12g01227 489 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Car12g01227 489 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01227 489 Pfam Protein kinase domain 292 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01260 Car12g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01227 Car-Chr12:11666806 Car18g00857 Car-Chr18:9596081 3.16E-17 dispersed
Car12g01227 Car-Chr12:11666806 Car05g01260 Car-Chr5:11736841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89255 PF00069 Pkinase 1.50E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01227 - - cmax:111465522 954.896