Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01235 ATGGCCAACGCCACCGTGCCGGAGACCGACTTGGGTGGCGTAAATTCTTCGCCGTCGTCTTCGTCCTCCTCGTCTCGGCCCAAACAAGGCGGTACCCAATTGAAGCGCGGGCGAGAAAATAGCAGCAGCAGCAGCAGCAACGACAACAATCGACACCCAATTTACCGCGGCGTCCGAATGAGGGTGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCGACGCCTGAAATGGCGGCGCGTGCTCATGACGTCGCCGCACTTACCATCAAAGGCAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTCTCCTCCTCCCCCCGCGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCCAACGTCGACCCTCCTCCACCCCCTCCGCCGTTATCTCCATCCTCTCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATAGTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGTAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA 753 55.91 MANATVPETDLGGVNSSPSSSSSSSRPKQGGTQLKRGRENSSSSSSNDNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETECVIPASFQPLPFSW 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11712853 11713605 + Carg18590-RA Car12g01235 158851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01235 250 MobiDBLite consensus disorder prediction 141 158 - -
Car12g01235 250 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Car12g01235 250 MobiDBLite consensus disorder prediction 138 184 - -
Car12g01235 250 MobiDBLite consensus disorder prediction 1 52 - -
Car12g01235 250 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Car12g01235 250 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00709 Car-Chr6:4345591 Car12g01235 Car-Chr12:11712853 1.43E-44 dispersed
Car12g00237 Car-Chr12:1595860 Car12g01235 Car-Chr12:11712853 5.96E-49 dispersed
Car16g01062 Car-Chr16:9136091 Car12g01235 Car-Chr12:11712853 6.86E-44 dispersed
Car10g00596 Car-Chr10:3011050 Car12g01235 Car-Chr12:11712853 2.90E-64 wgd
Car11g00522 Car-Chr11:2808630 Car12g01235 Car-Chr12:11712853 9.51E-47 wgd
Car12g01235 Car-Chr12:11712853 Car14g01146 Car-Chr14:10096742 5.87E-42 wgd
Car12g01235 Car-Chr12:11712853 Car05g01271 Car-Chr5:11800091 3.89E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4490 PF00847 AP2 4.40E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01235 K09286 - csv:101212945 296.204