Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g01245 | ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACTGCCGCTGCCATTATCGGCCACGATGGTAGCGTCTGGGCTCAGAGCGCCGCATTTCCTCAGTGCAAGCCTCAAGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGGCATCTTGCACCTACTGGATTACATATTGCAGGCACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCCTCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTTGTTTACGTCGATGATCATCTTATGTGCGACATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCAATACTTTCCCTCAGTTCAAGCCTGAAGAAATTACTGCCATCATGAATGACTTCAATGAACCCGGGGTGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGGGAGCCTGGACTTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTATGGCTCTAATCGTTGGCATCTATGATGAACCAATGACTCCCGGTCAGTGCAATATGATTGTTGAAAGGCTTGGAGATTATCTCATGGAACAGGTACTTGGTTTAGTTTCTTTCCAGTCTCTGGCAAGTTCCAAGATTCAGTATTAG | 828 | 48.19 | MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSAAFPQCKPQEITGIMKDFDEPGHLAPTGLHIAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGLVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSNTFPQFKPEEITAIMNDFNEPGVLAPTGLYLGGAKYMVIQGEPGLVIRGKKGPGGVTVKKTGMALIVGIYDEPMTPGQCNMIVERLGDYLMEQVLGLVSFQSLASSKIQY | 275 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 11761833 | 11766444 | + | Carg18600-RA | Car12g01245 | 158861 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g01245 | 275 | Pfam | Profilin | 135 | 258 | IPR005455 | GO:0003779 | |
| Car12g01245 | 275 | Pfam | Profilin | 1 | 132 | IPR005455 | GO:0003779 | |
| Car12g01245 | 275 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00075 | Car-Chr1:421448 | Car12g01245 | Car-Chr12:11761833 | 5.44E-65 | dispersed | |
| Car05g01288 | Car-Chr5:11896092 | Car12g01245 | Car-Chr12:11761833 | 3.62E-73 | dispersed | |
| Car05g01289 | Car-Chr5:11899911 | Car12g01245 | Car-Chr12:11761833 | 7.52E-70 | dispersed | |
| Car08g00630 | Car-Chr8:4036191 | Car12g01245 | Car-Chr12:11761833 | 8.29E-75 | dispersed | |
| Car12g01245 | Car-Chr12:11761833 | Car17g00703 | Car-Chr17:6453074 | 3.94E-76 | dispersed | |
| Car12g01245 | Car-Chr12:11761833 | Car14g01139 | Car-Chr14:10038186 | 2.65E-65 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g01245 | K05759 | - | twl:119992955 | 256.529 |