Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01246 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGACGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGACTGCAAGGAGGTTGATGTCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTTGTTATATTGCTGGAACAAGGCTACACTATCGCATTTGTTTTTGGTCATTATACCTTTGTTTTCAAGTTACTTGCACATTTTGTTCCGTCATTTTATTATGGCTTTATATTAGTTGAAGAATCTGCTGCTGCTGTTGCTGCTTTAGGCTTTTGTACAAATTATATAATTCCGCTGAAAAATCTTTTCTGCCTCATGCTTCAGGTCATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAAGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCACCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAGACAATTCTTGAACCATATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCCGAGTTCTGTTCATTCGTATCTGCTTGCATCAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGATCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1269 41.21 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDCKEVDVDFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVVILLEQGYTIAFVFGHYTFVFKLLAHFVPSFYYGFILVEESAAAVAALGFCTNYIIPLKNLFCLMLQVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVSFPR 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11767614 11770658 + Carg18601-RA Car12g01246 158862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01246 422 ProSiteProfiles Protein kinase domain profile. 69 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01246 422 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Car12g01246 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Car12g01246 422 Pfam Protein kinase domain 171 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01287 Car12g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00592 Car-Chr11:3218237 Car12g01246 Car-Chr12:11767614 1.04E-25 dispersed
Car12g01246 Car-Chr12:11767614 Car12g01289 Car-Chr12:11950390 5.17E-22 dispersed
Car12g01246 Car-Chr12:11767614 Car05g01287 Car-Chr5:11892559 1.54E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89257 PF00069 Pkinase 1.10E-56 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01246 K04368 - csv:101218848 512.301