Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01250 ATGAAGATAGTGGAATTGGAAGATGCTGGGACTGATCGGGAAGATGAAATCGGTAGCGGTCAGATTGTGAAGGTGGATGCTAAAAGAGCTTTGGTTGGGGCTGGGGCTCGAATCTTGTTCTACCCTACCCTTTTCTACAACGTTCTTCGTAATAAAATGGAAGCCGAATTTAGATGGTGGGATGAAGTCGATCAGTTTCTTCTGCTGGGTGCAGTGCCGTTCCCCAAACACGTGCCGAGATTGAAGAAGCTCGGTGTTGGCGGCGTGATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTGTATTATCGCCATGGAATTGACCACTTACAAATCCCCACCAGAGATTACTGTTTTGCTCCTAAATTTTCTGATATTAAACGAGCTGTGGACTTCATTCACAGAAATGCATCGTCTGGTAAAACGACATACGTCCACTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCCGCCCTGGAATATGTGCGCTCGAGAAGACCACGCGTGTTGCTCGCCCCATCGCAATGGGAGGCTGTTCAAGAATACAGCAACCGTCGTCCAGCTACAAGTTCCAGCTCACCCTCAGGAGGAGATGCGGTGCTCATTACGAAAGACGATCTAGAAGGATATCATGGTACGTGCATCGACGGTGTGGGTAGACAACTTGCAGTTGTCCCTAGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAGTTCACGGCAGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCT 843 48.16 MKIVELEDAGTDREDEIGSGQIVKVDAKRALVGAGARILFYPTLFYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKHVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLQIPTRDYCFAPKFSDIKRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPATSSSSPSGGDAVLITKDDLEGYHGTCIDGVGRQLAVVPRMGKSKPMIARLSCLFSSLIVHGSSGSLIKRLPVSEA 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11791497 11793713 + Carg18605-RA Car12g01250 158866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01250 281 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Car12g01250 281 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Car12g01250 281 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Car12g01250 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01293 Car12g01250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02426 Car-Chr4:19356787 Car12g01250 Car-Chr12:11791497 5.16E-06 dispersed
Car05g00972 Car-Chr5:9270867 Car12g01250 Car-Chr12:11791497 1.74E-98 dispersed
Car12g01250 Car-Chr12:11791497 Car16g01057 Car-Chr16:9093168 1.55E-100 dispersed
Car12g01250 Car-Chr12:11791497 Car05g01293 Car-Chr5:11911778 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01250 - - bhj:120080407 533.872