Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01256 ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTCTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCGGATTTTAGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTAGCGGCGAGGAACAGGCGATGGCGCGAGTGGAGTCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAACTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA 1200 53.0 MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11829776 11830975 + Carg18611-RA Car12g01256 158872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01256 399 ProSiteProfiles Zinc finger C3H1-type profile. 147 174 IPR000571 GO:0046872
Car12g01256 399 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 172 IPR000571 GO:0046872
Car12g01256 399 MobiDBLite consensus disorder prediction 1 52 - -
Car12g01256 399 MobiDBLite consensus disorder prediction 32 52 - -
Car12g01256 399 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01366 Car-Chr1:12022257 Car12g01256 Car-Chr12:11829776 1.01E-99 dispersed
Car09g00274 Car-Chr9:1495919 Car12g01256 Car-Chr12:11829776 1.56E-104 dispersed
Car11g00553 Car-Chr11:2977852 Car12g01256 Car-Chr12:11829776 1.04E-153 dispersed
Car11g01598 Car-Chr11:12640412 Car12g01256 Car-Chr12:11829776 4.97E-65 dispersed
Car12g00569 Car-Chr12:3813502 Car12g01256 Car-Chr12:11829776 2.10E-74 dispersed
Car12g01256 Car-Chr12:11829776 Car19g00787 Car-Chr19:8548602 7.44E-66 dispersed
Car20g00300 Car-Chr20:1736664 Car12g01256 Car-Chr12:11829776 6.82E-55 dispersed
Car12g01270 Car-Chr12:11877213 Car12g01256 Car-Chr12:11829776 7.73E-06 transposed
Car10g00622 Car-Chr10:3158837 Car12g01256 Car-Chr12:11829776 1.16E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4492 PF00642 zf-CCCH 4.60E-05 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01256 - - cmax:111465573 772.696