Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01280 ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA 633 49.61 MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESWVDLNTTRLSISIPNSSQHEFRSNNKHNQNP 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11916386 11917616 + Carg18636-RA Car12g01280 158896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01280 210 ProSiteProfiles WRC domain profile. 77 122 IPR014977 -
Car12g01280 210 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car12g01280 210 Pfam WRC 78 111 IPR014977 -
Car12g01280 210 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01280 - - - cmos:111449520 210.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01337 Car-Chr5:12104148 Car12g01280 Car-Chr12:11916386 2.89E-32 dispersed
Car11g00602 Car-Chr11:3289920 Car12g01280 Car-Chr12:11916386 6.31E-08 dispersed
Car12g01280 Car-Chr12:11916386 Car20g00815 Car-Chr20:5243314 1.24E-37 dispersed
Car18g00624 Car-Chr18:7457300 Car12g01280 Car-Chr12:11916386 3.55E-37 transposed
Car01g00027 Car-Chr1:139119 Car12g01280 Car-Chr12:11916386 2.97E-48 wgd
Car12g01280 Car-Chr12:11916386 Car14g01092 Car-Chr14:9566099 2.42E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g01337 CCT,ECH 6 110 GRF Transcription Factor Family AT3G13960 74.3 3.0e-43 173.3
Car10g00681 CCT,CST,ECH 8 110 GRF Transcription Factor Family AT3G13960 71.8 7.4e-42 168.7
Car11g00602 CCT,CST,ECH 8 110 GRF Transcription Factor Family AT3G13960 72.8 7.4e-42 168.7
Car12g01280 . 2 110 GRF Transcription Factor Family AT3G13960 67.6 1.7e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4495 PF08879 WRC 2.50E-18 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g01280 Car_Chr12 FPKM 50.801388 53.163273 26.848948 27.706989 10.444922 11.673429 10.432253 25.589663 27.228691 30.366167