Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01280 ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA 633 49.61 MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESWVDLNTTRLSISIPNSSQHEFRSNNKHNQNP 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11916386 11917616 + Carg18636-RA Car12g01280 158896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01280 210 ProSiteProfiles WRC domain profile. 77 122 IPR014977 -
Car12g01280 210 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car12g01280 210 Pfam WRC 78 111 IPR014977 -
Car12g01280 210 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01337 Car-Chr5:12104148 Car12g01280 Car-Chr12:11916386 2.89E-32 dispersed
Car11g00602 Car-Chr11:3289920 Car12g01280 Car-Chr12:11916386 6.31E-08 dispersed
Car12g01280 Car-Chr12:11916386 Car20g00815 Car-Chr20:5243314 1.24E-37 dispersed
Car18g00624 Car-Chr18:7457300 Car12g01280 Car-Chr12:11916386 3.55E-37 transposed
Car01g00027 Car-Chr1:139119 Car12g01280 Car-Chr12:11916386 2.97E-48 wgd
Car12g01280 Car-Chr12:11916386 Car14g01092 Car-Chr14:9566099 2.42E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4495 PF08879 WRC 2.50E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01280 - - cmos:111449520 210.69