Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01285 ATGGATGGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACTGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTACTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACATCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCAAAGGGGTTAGCAAAAGAAGAGGATGAGGGACTAGTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGTGACCTATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCC 729 47.46 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNISNKSKTGSKGRGSEASKLSKGLAKEEDEGLVDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11936906 11939595 + Carg18641-RA Car12g01285 158901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01285 243 MobiDBLite consensus disorder prediction 151 192 - -
Car12g01285 243 MobiDBLite consensus disorder prediction 151 168 - -
Car12g01285 243 Pfam PHD-finger 199 243 IPR019787 -
Car12g01285 243 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Car12g01285 243 ProSiteProfiles Zinc finger PHD-type profile. 196 243 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00605 Car-Chr12:4025006 Car12g01285 Car-Chr12:11936906 3.47E-133 dispersed
Car12g01285 Car-Chr12:11936906 Car17g00661 Car-Chr17:6128488 2.93E-125 dispersed
Car12g01285 Car-Chr12:11936906 Car05g01330 Car-Chr5:12078700 2.68E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4497 PF12165 Alfin 1.20E-69 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01285 - - jre:109009410 441.039