Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01289 TATTTATTTCACTTCTCTTTATTGGAAGACTTCAGTGCGACCCTCCACCGGAGGAAACTAATAAGCCCGCCAATCATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTTCCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAATAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTCTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATATATGGACGGTGGATCACTCGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAAGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAACTAGCATCACCATCTGCTCCTGAACAATTTTCCCCTGAGTTCTGCTCTTTCATTTCTTCATGCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1137 43.18 YLFHFSLLEDFSATLHRRKLISPPIMKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSCLHKDPQQRSSARELLVHPFIKKFEHLDVDLAAYFKDAGSPLATF 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11950390 11953133 + Carg18645-RA Car12g01289 158905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01289 378 Coils Coil 130 150 - -
Car12g01289 378 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Car12g01289 378 ProSiteProfiles Protein kinase domain profile. 95 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01289 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Car12g01289 378 Pfam Protein kinase domain 97 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00666 Car-Chr10:3423175 Car12g01289 Car-Chr12:11950390 0 dispersed
Car12g01246 Car-Chr12:11767614 Car12g01289 Car-Chr12:11950390 5.17E-22 dispersed
Car12g01289 Car-Chr12:11950390 Car14g00608 Car-Chr14:3382833 5.02E-75 dispersed
Car01g00020 Car-Chr1:111520 Car12g01289 Car-Chr12:11950390 2.94E-59 wgd
Car11g00592 Car-Chr11:3218237 Car12g01289 Car-Chr12:11950390 0 wgd
Car12g01289 Car-Chr12:11950390 Car14g01085 Car-Chr14:9531660 4.94E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89259 PF00069 Pkinase 1.00E-69 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01289 K20603 - csv:101206374 648.662