Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01296 ATGGCCGCTGTTCGAAATGTGTTCCTCTTCCTCACCATCTTCCTCGTCGGCGGTCCGCCTCTTTCCTGTTCCCTCTCCGATAACGAGGCCCTCCTGAAGCTCAGGCAATCCTTCACCCATGCCGAATCCCTTAATTCCTGGAACCAGGACTCCCAACCCTGCGCCGCTCGATGGACTGGCATCATCTGCCACAGAGGCGTCATCACCGGTCTCCATCTCACCGGCCTCCGACTCTCCGGCCAGATCGACATCGAAGCTCTCCTAGAGCTTCGCAGCCTTCGAACCGTCAGCCTCGTGAACAACAGCTTCGCCGGGCCGATTCCCGAGTTCAACAGAATCGGCGTTCTCAAATCGCTCCTTCTCACAGGGAATGATTTCTCCGGGGCTATTCCTACCGATTTCTTCGCATCCCTCGCCTCTCTCAAGAAGGTTTGGCTGTCTTCCAACAATTTCTCCGGCGACATTCCGCACTCTCTGGCGAAACTCTCGTATCTAATCGAACTCCATCTCGAAAACAACCAATTCTCCGGCAAAATCCCTCACCTACACCAGGCCGCCTTAACCTCTCTAGATCTCTCCAATAACAAGCTGGAGGGAGAAATTCCGGAGAATCTAGCGAAGTTCGACGCGAACGCATTTGCCGGAAACGAAGGTCTGTGCGGGAAGCCGCTCCCGAAATCATGCGACAGCAATAACGCGCAGATTTCGGAGGAAAACGCGTCTCCTCCGGGGGAATCACAAGGCAGCGTCTCCAAATTAGTAGTGGCGTCGTTGATAGCGGTGGCTGTATTTCTGGTGGTGGTTATGTTTCTGAGCGCTTCGAAGCGGAGAGAAGAGAAGTTCAGCAAGCTAGGGCGGGAGCAGATGAATGAGATGGTGGAGGTGCACGTGCCGAGTTCCGGGCATAGGGAGCAGCTGAGTAGAAAAGGTGGGGATTCCAGGAGAGGGTCGCAACAGGGGAAGGGAGGGATGAGTGATCTTGTGGTAGTGAACGAAGAAAAGGGTACATTTGGGATGGCGGATTTGATGAAGGCGGCGGCGGAGGTGCTGGGGAATGGTGGGTTGGGGTCGGCTTACAAGGCCGTCATGGCAAATGGGCTGTCGGTGGTGGTCAAAAGAATCAGAGAAATGAACAAATTAGGGAAGGATGGGTTCGATGCAGAGATGAGGCGCATGGGACGGCTGCAGCATCACAATATTCTCACGCCTTTGGCTTACCATTACAGGCGGGAGGAGAAGCTGCTGGTGTCCGAGTACATTCCAAAAGGCAGCCTCTTGGACCGTGGAGCCTGCCATGCGGAGCTTAACTGGGCCACCCGGTTAAAGATCGTGAAAGGGATCGCCAGAGGCCTAGGGTTTCTCCATTCCGAGTTCGCGACCTATGATCTTCCGCATGGGAATCTGAAATCAAGCAACATTCTTCTAAGCGACACCTACGAGCCACTTCTCAGCGACTACGCGTTTCATCCGCTAATCAATCCAAACAACGCGACGGAGGCAATGTTTGCGTACAAATCCCCGGAGTACGCGCAACGGCAGGAAGTTTCCCCAAAATCTGATGTTTATTGCCTTGGAATTATCATCCTAGAAATTCTGACCGGCAAATTTCCTTCTCAATATCTTAGCAATGGCAAGGGAGGGACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTAGCCGAGAAGAGGGAGGCGGAACTCATAGACCCTGAGATAGCAAACGACGCGAATGCAGTGAGTCGGATGGTCGAGCTCCTTAGAATCGGCGCCGATTGCACCCAATCCAATCCTCAGCAACGGCCAGAAATGAAGGAAGCCATTAGGAGAATAGAAGAAATATGA 1839 53.62 MAAVRNVFLFLTIFLVGGPPLSCSLSDNEALLKLRQSFTHAESLNSWNQDSQPCAARWTGIICHRGVITGLHLTGLRLSGQIDIEALLELRSLRTVSLVNNSFAGPIPEFNRIGVLKSLLLTGNDFSGAIPTDFFASLASLKKVWLSSNNFSGDIPHSLAKLSYLIELHLENNQFSGKIPHLHQAALTSLDLSNNKLEGEIPENLAKFDANAFAGNEGLCGKPLPKSCDSNNAQISEENASPPGESQGSVSKLVVASLIAVAVFLVVVMFLSASKRREEKFSKLGREQMNEMVEVHVPSSGHREQLSRKGGDSRRGSQQGKGGMSDLVVVNEEKGTFGMADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRIREMNKLGKDGFDAEMRRMGRLQHHNILTPLAYHYRREEKLLVSEYIPKGSLLDRGACHAELNWATRLKIVKGIARGLGFLHSEFATYDLPHGNLKSSNILLSDTYEPLLSDYAFHPLINPNNATEAMFAYKSPEYAQRQEVSPKSDVYCLGIIILEILTGKFPSQYLSNGKGGTDVVQWVSSAVAEKREAELIDPEIANDANAVSRMVELLRIGADCTQSNPQQRPEMKEAIRRIEEI 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11984585 11986927 - Carg18652-RA Car12g01296 158912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01296 612 Pfam Protein kinase domain 348 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01296 612 MobiDBLite consensus disorder prediction 297 315 - -
Car12g01296 612 MobiDBLite consensus disorder prediction 294 325 - -
Car12g01296 612 ProSiteProfiles Protein kinase domain profile. 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g01296 612 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
Car12g01296 612 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Car12g01296 612 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01346 Car12g01296 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00260 Car-Chr12:1743914 Car12g01296 Car-Chr12:11984585 7.42E-142 dispersed
Car12g01296 Car-Chr12:11984585 Car11g00462 Car-Chr11:2548674 1.88E-111 dispersed
Car01g00001 Car-Chr1:9182 Car12g01296 Car-Chr12:11984585 2.03E-148 wgd
Car12g01296 Car-Chr12:11984585 Car05g01346 Car-Chr5:12132090 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89260 PF00069 Pkinase 3.90E-29 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01296 - - cmo:103498999 976.852