Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g01298 ATGTTGAGACAAATCCTGATGGTATATACATTGATGCATTATAGAGATGAAAAGTCACAGCTTCTTTTAGGCATAAGGCACGCTAACAGGCAGCAGCCCGCTCTGTCTTCGTCGGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTCATTCCTTTGGCCAAGTATACGAAAGCAATGTACACACAAGTTTCGCTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCGAACCGAGTTTCTATATGGGAAGTTGAGCCGGTTGTGACCCCGTTCTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTCAAGAGAGCCATGCCGTGGTTCGGTGACGACTTTGGCATGAAAGATACACCAAGCTCGATCTTCCCGGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAGTCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTGCATGGAACTTTAACCAACGATGATCCATCTAAATTATTGTGTTTTCAAGCTCCAGTAATGTCGTCATCAAATCTCCAATTCAGCAAGGCAAATCAACAGAACCAAGTTGGCCAGTTGCCAGCAACGTCGTGGTCTCAACAGCAGCAGCTGCAGCAGTTGCCACCCCAGCCGGAACTACGACAGCAGCAGCAGCAGCCGAAGCAGTCGCAACAACAACAACAGACCTCCCAATCCGCTCTTCCGAACAATGGTGTTGGTGGTGCAAACCATTTGTCAAATCAGAGTTTGCAACAACCACTTGTATACTCTCAGCTACAGCAACAGCAACAGCAATTGCTTGCGGGAAATGTACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCGATTGAGACGACATCTTTATTGCAGGAAACACAGTTTCAGCCACAAATAGATCAGCAGCCTACCCTTGTTTCGAAACACCATCAGCAGACACAATTTCAACAGGCCCCACTGCAATTATTGCAACAAAGTCTGTCTCAAAGAACACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATAATCCCTTCAGAGCAACAACTGCAATGGCAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAACAGCAGCAGCAGCAACCGTTGGTCTCCCCAGCTAGCCCGCTATTTCCACCTCAAATGATACAGCCGCATCCTGTGCATCAGCAAAACCAGCAGTTACCACCCTTGCCTTTGTCCAATCAGCCACAGTTCAACACTAGTGGAGGCAGCTTCCAAACAGAAAAACATAACAGCAATGGCTTCTCAAGTTTAGGTCTGATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGGGGATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGTATCAAACCTGCTCAATAAGAATCAACAAGGAGCAGCCACACTGGGGGGAGATTTGGTAGTTGAGCCTGCAACTAACCTGCCTCAGGAGCTGCCAAGCAAACCTGATTTGCGGAACAAACCCGAGTTTCCTAACTCAAAAGGATTGGACCAACTGAAATATAAAGGCACCGTTCCCGATCAGGTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACAAACCAACATCCCCTTCAGTAATAGCATTGATGGATGGGCTCCAGATACCTTATTGTCGAGGGGATACGACTCTCAAAAAGATCTTCAGAACTTACTTTCGAACTACGAGGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCCGCTCGCAGTCATTTGGGGTTCCAAACTTGCCCTTCAAGCCTGGCTGCTCGAATGATGTCAACGTCAATGAAGCTGGAGCCTTAAGTAGTGGATTGTGGGCAAATCACAGTCAACGAATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGCATCGATGTCACTCGTTACAAAGGATATGACGAGCTTAGGCATGATCTTGCCCGAATGTTTGGTATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGCGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTATCATCTTCTGAAGTACAGCAGATGAGTTTAAATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGCGGGACGGACAGTGGAAACGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCCTCGTTCAATTGA 2625 46.13 MLRQILMVYTLMHYRDEKSQLLLGIRHANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNSQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLCFQAPVMSSSNLQFSKANQQNQVGQLPATSWSQQQQLQQLPPQPELRQQQQQPKQSQQQQQTSQSALPNNGVGGANHLSNQSLQQPLVYSQLQQQQQQLLAGNVQSHQTSQPSNKNSIETTSLLQETQFQPQIDQQPTLVSKHHQQTQFQQAPLQLLQQSLSQRTQQQPQVQQFSQPIIPSEQQLQWQLLQKLQQQQQQQQQQQPLVSPASPLFPPQMIQPHPVHQQNQQLPPLPLSNQPQFNTSGGSFQTEKHNSNGFSSLGLMQSQQVPITQSHNQFKPTTAIRGYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDLVVEPATNLPQELPSKPDLRNKPEFPNSKGLDQLKYKGTVPDQVEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPQTNIPFSNSIDGWAPDTLLSRGYDSQKDLQNLLSNYEGGVPRDIETELSTAAIRSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLNGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFN 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11997221 12000820 - Carg18654-RA Car12g01298 158914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g01298 874 MobiDBLite consensus disorder prediction 447 508 - -
Car12g01298 874 MobiDBLite consensus disorder prediction 265 325 - -
Car12g01298 874 ProSiteProfiles PB1 domain profile. 748 835 IPR000270 GO:0005515
Car12g01298 874 MobiDBLite consensus disorder prediction 584 610 - -
Car12g01298 874 Pfam Auxin response factor 53 129 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car12g01298 874 Pfam AUX/IAA family 745 835 IPR033389 -
Car12g01298 874 MobiDBLite consensus disorder prediction 468 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01298 Car-Chr12:11997221 Car03g01289 Car-Chr3:9838753 4.63E-30 dispersed
Car12g01298 Car-Chr12:11997221 Car05g01348 Car-Chr5:12143560 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g01298 - K14486 csv:101210917 1245.34