Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00028 ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCTTCGATGTTCTGCAACAAGACGTCGATTATTTCTCCGGCGCCGGAGGGGCTGACACTCACTTTGGCTCATTTGAATTCCTCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCGGTGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGAAAAAGACCGGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCAGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTATTCCGCCGTCGTTGATCTACGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGACACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAAAGGCAACCTCGTTGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCACGGCGTTGCTGAGGCTATCACGTCAGACCACCGCCCGTCCCGGGAAGACGAGAGGCAGCGGATCGAGTCCACGGGTGGATATGTTGATATGTGCAATAATGGGGTTTGGAGAGTTCAGGGGTCTCTGGCTGTCACAAGAGGAATTGGGGATGCTCACCTCAAACGATGGGTGATAGCTGAGCCCGAGACGAGGGCGATTCGTATCGAGCCTCGACATGAGTTCTTGATCTTGGCCTCTGACGGATTATGGGATAAGGTGAGCAATCAAGAAGCAGTGGAGATTGCACATCCATTGTGCGTAGGGACCGAGAAGGCGCAGCCATTGGTGGCGTGTAAAAAGCTTGTGGAGCTATCAATTTCAAGGGGCTCAGTTGATGACATTAGTGTAGTACTCATTCAATTGCCTAACTTCATCTAA 1170 52.05 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEGLTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVAVAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRYSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNDTDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKKGNLVVSNIGDCRAVLSSHGVAEAITSDHRPSREDERQRIESTGGYVDMCNNGVWRVQGSLAVTRGIGDAHLKRWVIAEPETRAIRIEPRHEFLILASDGLWDKVSNQEAVEIAHPLCVGTEKAQPLVACKKLVELSISRGSVDDISVVLIQLPNFI 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 259015 260639 - Carg26029-RA Car13g00028 158945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00028 389 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
Car13g00028 389 Pfam Protein phosphatase 2C 136 378 IPR001932 -
Car13g00028 389 ProSiteProfiles PPM-type phosphatase domain profile. 130 385 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00617 Car13g00028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00028 Car-Chr13:259015 Car15g00023 Car-Chr15:232537 1.32E-84 dispersed
Car01g00617 Car-Chr1:3616119 Car13g00028 Car-Chr13:259015 0 wgd
Car13g00028 Car-Chr13:259015 Car04g00139 Car-Chr4:749146 1.62E-119 wgd
Car13g00028 Car-Chr13:259015 Car04g01034 Car-Chr4:5923487 6.31E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00028 K17506 - csv:101207841 624.78