Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00086 ATGGATAATATCCTCGACGATTTCCCCAATTCCTTCAACAATTTTCAGTTCAATCCCCAACTCTCTAATGGGTTTCTCAAAATCAACCGCGAAACCGTCGATCCCCTCCAGATTCCGGCCAAGCCGCAGCAAAATCAGCAGCAAATCAGTAATAATTCATCATCGTCGTCGTCGATGTCGCCGTCGAGCTCCGAGGGAGACTCGCCGGACAGCCAAGACACCTCGAATACGATGCTGAAATACATCACCGAGATGCTGATGGATGAAGGAGAGGATCTTAAAACAAAGCCCTGTATGCTTCTTGATTGCTTGGCTCTTCAAGCTGCTGAGAAGTCTTTTTATGATGTTCTTGGCCAGAAATATCCTCCTTCTCCGACAGGAAATGGCGATTCAGCTCAGGATTTCAGCTCGGGTAACTCCTCTGTTCTTGGATTGTCTGAAAATTGTGTTGTGGGTCATGATTCGTTTGTTGGGATGCAATATATTGGGCATTTTAGGCAAGGAGTTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAACATTTGGGACAATTGATTTGGATAATGATCTGTGTGTGTCTGTTCCTTTTAAGGATGTTGATGTTTCTAGGATTAGTGGGTCGTTGAGAGACAAGAAAAACCGACAGAGGGAGGAGGAGAGTGATGGGGAGCTGAGAAGTAGTAAGCAGTCAGCTACTTTTGCTGATGATAATTCACTGTCTGATTTGTTCGATGAGGTTCTGTTGTGTCGGGGCGAGAGTCGGCGGTCGCCGTGCGGTTCGGATGAATCGTCGGAGACCGAAGTGAATAAGAAGAACTCGAGAGGGCGGAGAAGGAAAGGGAAGAAAACTCGATCTAAGAAGCAAGATAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTAACACAATGTGCTCAAGCTATTTCGAATTATGATCAAAGAACTGCTAATGAGCTGTTGAATCAGATCAGGCAGCATTCTAGTCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCTAACGGTCTCGAGACTCGGCTTGCGGCTGGGACGCCTCTGTATATGCCATTTGCAAGTAATGAAACCTCGGCTGCTGAGATCCTGAAAGCGTTTCAGATGTTCATTAAGGCATGCCCGTTTCGGCGTATGTCGTATTTCTATGCGAATCGAACGATTATGAAGCTAGCTGAGAAAGAAACAACGCTGCATATCATTGATTTTGGTATTCTGTATGGTCTCCAATGGCCTTGTTTGATTCAGCGGCTCTCTCGTCGACCTGGTGGACCTCCCAAGGTTCGAATCACCGGGATTGAGCTTCCCCAGCCGGGGTTTCGCCCTGCTGAACGGGTTGAGCAGACTGGTCGTCGCCTTGCACATTACTGTAAGAGATTCAATGTGCCATTTGAATACAAGGTCTTGGCTCAGAAATGGGAAACGGTTAAATACGAGGATCTTAATGTCAATCGAGACGAACTGACTATTGTGACTTGTTTGTTCCGACTTAAGAACGTACCCGACGAAACCGTGGTTGCGAACAGTCCACGAGACAGGGTTCTGAAGTTGATAAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTGATGAATGGCTCATTCAACACTCCTTTCTTCAACACAAGGTTTAAGGAGGCATTGTTTCATTACTCGTCGTTGTTCGACATGTACGAAGCGACGATGCCTCGAGATATCCCAGAGAGGCATCTATGTGAGAAGGAAATCCTAGGAAGAGACATCGTGAACGTGATAGCGTGCGAGGGGCTCGAGAGAGTTGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACGAGGGCCGGGTTCAAGCAAGTACCATTAGACCAGGATCTGCTGAAGAATGTGGATAAGATAGTGAACACAGAATACCACCAAGACTTCGTGATCGATCAAGACGGGTCGTGGATGTTGCAAGGGTGGAAGGGTCGGATCATCTATGCGTTATCGTGTTGGGTAGTCGCCTAA 2013 46.45 MDNILDDFPNSFNNFQFNPQLSNGFLKINRETVDPLQIPAKPQQNQQQISNNSSSSSSMSPSSSEGDSPDSQDTSNTMLKYITEMLMDEGEDLKTKPCMLLDCLALQAAEKSFYDVLGQKYPPSPTGNGDSAQDFSSGNSSVLGLSENCVVGHDSFVGMQYIGHFRQGVEEASKFLPVNGTFGTIDLDNDLCVSVPFKDVDVSRISGSLRDKKNRQREEESDGELRSSKQSATFADDNSLSDLFDEVLLCRGESRRSPCGSDESSETEVNKKNSRGRRRKGKKTRSKKQDNSVGVVDLWTLLTQCAQAISNYDQRTANELLNQIRQHSSPSGDGNQRLAHYFANGLETRLAAGTPLYMPFASNETSAAEILKAFQMFIKACPFRRMSYFYANRTIMKLAEKETTLHIIDFGILYGLQWPCLIQRLSRRPGGPPKVRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEYKVLAQKWETVKYEDLNVNRDELTIVTCLFRLKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVMNGSFNTPFFNTRFKEALFHYSSLFDMYEATMPRDIPERHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKNVDKIVNTEYHQDFVIDQDGSWMLQGWKGRIIYALSCWVVA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 634221 636233 - Carg20647-RA Car13g00086 159003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00086 670 MobiDBLite consensus disorder prediction 39 75 - -
Car13g00086 670 MobiDBLite consensus disorder prediction 254 273 - -
Car13g00086 670 MobiDBLite consensus disorder prediction 254 289 - -
Car13g00086 670 MobiDBLite consensus disorder prediction 210 226 - -
Car13g00086 670 Pfam GRAS domain family 300 667 IPR005202 -
Car13g00086 670 MobiDBLite consensus disorder prediction 210 232 - -
Car13g00086 670 ProSiteProfiles GRAS family profile. 289 668 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00086 Car-Chr13:634221 Car14g00115 Car-Chr14:563954 0 dispersed
Car01g00558 Car-Chr1:3292228 Car13g00086 Car-Chr13:634221 0 wgd
Car13g00086 Car-Chr13:634221 Car02g00572 Car-Chr2:4374846 0 wgd
Car13g00086 Car-Chr13:634221 Car20g00340 Car-Chr20:1938505 0 wgd
Car13g00086 Car-Chr13:634221 Car06g00255 Car-Chr6:1446580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4504 PF03514 GRAS 2.10E-116 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00086 - - bhj:120083055 1086.25